Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3954 |
Symbol | |
ID | 5612819 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 4831371 |
End bp | 4833920 |
Gene Length | 2550 bp |
Protein Length | 849 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640934908 |
Product | hypothetical protein |
Protein accession | YP_001475686 |
Protein GI | 157377086 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.0372326 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAATAGGC AACTGCTATT GAGTTGCAGG CTATGCTTAT CGACCTTCAG TGCACACTAT CGCCAATCCC CGCTGCAGGC GGGCTCGATA TTAATCGGCA TAATACTCGC GGTCACGCTG CTCATCGGTG TTCGTGCCAC CAACGAAAGT GCCATCGCCA GTTATAGCGA TGTCACAGAA CTGTTGAGTC AGCAGGCCCA TTACTCAATA GTCCCAATCG TTGGCAGCAA ACGGCTCGAT GAATCGCTCT ATTTTGATCT CAGAACTCAG GGGTTCAGTA ACGCCCTTGC GGTAGTTCAG GGGATATTGA CCGACCAGAA CAATCGCCGC TGGCTGGTGC AAGGAAGCGA TCTTATTGCG GCGCTCACCG CGCTATCAAG CAATGTTAAA CATGAGAATA AAACTAATAG TAAAACCAAT AGCAGTAAAT CGAATCACAC CGAAGCGGAC CTTCAAGCTT CCCGGCCGAC TCTACTGAAA AATGAACTCC CACTTGCAGC CCTGATAAGC GGCGCCCCCA TGGTGCTGAT GAGTCAAGAT CAGGCTAAGC AGTTCACCAC AGAAACCCCT TTTACGCTAA ACGGCGTGAA GCTTGAGGTG GTTGGCGTCG ACGATACGAT GAATCTGGGC AACCGTCTGC TGATGGATAT CTCTCTGGCT CAGACGCTAT TGGGCCGCCA GGGAAGTCTG AGTTACATTG CACTTTTTGG CGATATCACA AAACAGAGAG GGCAGATAGA GGCACTCATC GAAGGCCGTG GGGAGCTAAA CGAACGCGAT GGCGGAGAGA GCATGACGGC CCTGACCGAC AGCTTTCATC TTAATCTCAG TGCCATGAGC CTGCTGGCCT TCGTTGTAGG TCTGTTTATC GCCTATAACG GTGTACGTTA CAGCCTGTTA AAAAGACAGA GGTTGCTCAC TCAGTTGCAA CAACAGGGCG TCGCCAAGGC CCCCTTGATG CTGGCACTTT GCTTCGAGCT GTTGCTACTG GTGATAGTGG GGTCGGTGCT GGGGTTTGTT TTAGGCTTAC AGCTCAGCCA CTGGTTACAA CCTATGGTGT CTGTCACCCT CGAGCAGCTA TATGGCGCCA ATATCTTACC GGGCAGATGG CAGTGGAGCT GGCTACTGCA AGCTATGCTG CTGACTTTTA TCGCCGCCCT GCTCGCCTGT GCTTCATTGC TTATCGATCT CATCAGGCAA CCTTTAGGGC GTAACAGTAA CGCATTCTGC CGGGTAAGAA GCGCCGCAAA GACGCAGAAG ATTCAAATTA TCACAGCGTC ATTATTGGCT CTCTTTGCGG CGATATTGAT GCCACTTAGC CAGGATTATC AATTGACCAT GTCACTGTTG GGGTTAGTGG TTATCGCTAT TCCTCTGTCG CTGCCATGGT GTCTTGCTCG GCTGGTCTCC TGGCTTAACC TGATGGTTCC TAAGGGACTT ATCGGCTATC AGATTGCCGA AACAAAAGAG TTACTCCCGC CACTTTCCCT GGCCATGATG GCCATGTTGC TGGCCCTGAC CGCCAATATA TCGATGAACA CCTTAGTCGG CAGTTTCGAG ATCACCCTCA AAAATTGGCT CGATGCGAGA CTCCATGCCG AACTTTACCT CAGACCCGGC GATACACAGA TGCAGGAGGT GGTCGCCTCC CTCGAAGACA ACCCTAAAAT CGACTCAGTC TATAAACAGT GGAATCTGAT AAGTAAGGTA TCAAACCACC CTACCTATCT GCTGACTCGT GACCCGGTAT CGATCAAGCG CACCACAGTG CTAAAAAGCG CAATCGATGA TCTGTGGCCG GACTTTTTTG CCGGTAAACA CCTGCTGATG AGTGAGCCTT TGTCACTCAA ACTTGGACTG GAGTTGGGGG ACAGAGTCAC CATTGCGGCA CTGGATGATG CGAGCCTTAC TCTGGGAGGG ATCTATTTCG ATTACGGTAA CCCCTATGGC GAGATAATCC TGGCTCCTGT GATATGGCAA AACTCAGGTT TTAACGACAC CCCCACCAGC CTGGGATTGG CTACCAGTGA AGATATCGAC ACTCTGAAAC TCGAGCTACA GCAAAAGTTC TCCCTCAGTG ATAGTCAGAT CTACAGTCAG GAGAGAATAA AGCGGCAGGC GATCGCCATG TTTAAGCGCA CCTTCTCCAT CACTCAGGTG CTCAACAGTC TCACCCTGCT TGTCGCCGCC GTTGGCCTAT TCAGTGCCAG CTTTTTACTT ACCCAGGCAC GCATGGCTCC GATGGCGAGA CTCTACTGTC TGGGTGTATC GAGGCGCCAA TTAGGTTTTA TGGTATTTAG CCAGATGTGG CTCATCGTGC TGTTAACTTG CCTGGTCGCC CTACCGACGG GAGCGATACT CGGTTATCTG CTTATTAATA AGATCACCCT GCAGGCATTT GGTTGGACTA TTAATATGGT GTGGGATTGG CAAGCCTATG GCCAAGTGGT ACTGCTTGCG CTATTGGCAA CGACCATAGC CATCGCTCTC CCCCTCTTTA AGCTAATCCG TAAACCTCTG ATCTCCAGCC TACAGAGTGA CCTGTTATGA
|
Protein sequence | MNRQLLLSCR LCLSTFSAHY RQSPLQAGSI LIGIILAVTL LIGVRATNES AIASYSDVTE LLSQQAHYSI VPIVGSKRLD ESLYFDLRTQ GFSNALAVVQ GILTDQNNRR WLVQGSDLIA ALTALSSNVK HENKTNSKTN SSKSNHTEAD LQASRPTLLK NELPLAALIS GAPMVLMSQD QAKQFTTETP FTLNGVKLEV VGVDDTMNLG NRLLMDISLA QTLLGRQGSL SYIALFGDIT KQRGQIEALI EGRGELNERD GGESMTALTD SFHLNLSAMS LLAFVVGLFI AYNGVRYSLL KRQRLLTQLQ QQGVAKAPLM LALCFELLLL VIVGSVLGFV LGLQLSHWLQ PMVSVTLEQL YGANILPGRW QWSWLLQAML LTFIAALLAC ASLLIDLIRQ PLGRNSNAFC RVRSAAKTQK IQIITASLLA LFAAILMPLS QDYQLTMSLL GLVVIAIPLS LPWCLARLVS WLNLMVPKGL IGYQIAETKE LLPPLSLAMM AMLLALTANI SMNTLVGSFE ITLKNWLDAR LHAELYLRPG DTQMQEVVAS LEDNPKIDSV YKQWNLISKV SNHPTYLLTR DPVSIKRTTV LKSAIDDLWP DFFAGKHLLM SEPLSLKLGL ELGDRVTIAA LDDASLTLGG IYFDYGNPYG EIILAPVIWQ NSGFNDTPTS LGLATSEDID TLKLELQQKF SLSDSQIYSQ ERIKRQAIAM FKRTFSITQV LNSLTLLVAA VGLFSASFLL TQARMAPMAR LYCLGVSRRQ LGFMVFSQMW LIVLLTCLVA LPTGAILGYL LINKITLQAF GWTINMVWDW QAYGQVVLLA LLATTIAIAL PLFKLIRKPL ISSLQSDLL
|
| |