| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3936 |
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| Symbol | |
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| ID | 5613442 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4807155 |
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| End bp | 4807940 |
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| Gene Length | 786 bp |
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| Protein Length | 261 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640934890 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_001475668 |
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| Protein GI | 157377068 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.348402 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTCCCT CTCCTATCAT TTCACCGACA GCGATTTCAC CGGCAAAAAC TTCGGTGGCA
AAAAAAATCA GACTCGCTAA ATATCTCGCC CTGACAGGTC TGTGCTCACG CAGGGCCGCA
ACTCGTTATA TTCGTGATGG CCTGATCATG ATTGAAGGGC GCCAGGCGAA TCATATCGAT
ACCGTCACGC TCATTGAGTC CCCCGATGGT TTGATCTGCA AAGAGTTACT CCTGTTCGAT
GGCATGGCGG TCGAGGGCAT AGAGCCGAAA CAATACCGGA TGCTCAACAA ATGCGTCGGC
ACCGATTGCC GTCTGCTGCC CGATGACTCC GATTCCCTGC TGCACCTGCT ACCTGCAAGC
CCCAGACTCT ACCCCGTTGG GCGTTTAGAC AAAGACTCCC GTGGTCTCTT GTTACTCACC
AATGACGGAG AACTCACCCA GCACTTGATG CACCCCGATT TTGGCCATAC TAAAACCTAT
CGGGTGCGCG TCGACCGCCC CTATGGAGAT GAGTTTTTGC AAAAGATGGC TCAGGGGGTC
AGCTACCGAG ATGTCACCAC ACTCCCGTGC ACTATGACAC GTTTAAGTGA AGACCAATTT
GAGATAGTGC TGACACAAGG GCTAAACCGA CAGATCCGCC GCATGAGTCA GGCGCTGGGT
TTCAAGGTCA TCGACCTCAA ACGGGTGAAA ATCCAGACTC TGATGCTTGA GGATCTTAAC
GAGGGTGAGA TGAGAGAGTT AACGGTTGAA GAGATTGATA AATTAAAGCA GGAAACAAGG
ATCTAG
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| Protein sequence | MTPSPIISPT AISPAKTSVA KKIRLAKYLA LTGLCSRRAA TRYIRDGLIM IEGRQANHID
TVTLIESPDG LICKELLLFD GMAVEGIEPK QYRMLNKCVG TDCRLLPDDS DSLLHLLPAS
PRLYPVGRLD KDSRGLLLLT NDGELTQHLM HPDFGHTKTY RVRVDRPYGD EFLQKMAQGV
SYRDVTTLPC TMTRLSEDQF EIVLTQGLNR QIRRMSQALG FKVIDLKRVK IQTLMLEDLN
EGEMRELTVE EIDKLKQETR I
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