| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3931 |
|---|
| Symbol | |
|---|
| ID | 5612584 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 4802065 |
|---|
| End bp | 4802706 |
|---|
| Gene Length | 642 bp |
|---|
| Protein Length | 213 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640934885 |
|---|
| Product | amino acid transporter LysE |
|---|
| Protein accession | YP_001475663 |
|---|
| Protein GI | 157377063 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1280] Putative threonine efflux protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGTCGAT TGGGAATTAA CGATATTTGG TTGTTTGTAC TCTCGGGAAT TGCGCTGAAT
ATCATGCCGG GGCCCGACTC GCTTTATATT GTCGGCCGCA GTGCGACACA GGGCTTCAGG
GGCGGCTCGA TGGCTTCTTG GGGAATAGCG ACCGGCACCT TAGTGCATAT CTTGGCCGCA
GCGTTTGGCT TATCGGCAAT ACTCGCGACA TCGGCGATGG CTTTCACCGT TATTAAAGTG
GTTGGGTGTT GTTACCTGAT CTATATCGGC CTGACTATGT TATTGAGCCG CCGGGGAGCA
GCGACGCAGG ATGTTAAAGA TCAAGCGCCA ACCTCACTCT ATAGGATCTA CTCTCAAGGA
TTTTTAACCA ATGTGTTGAA CCCAAAAATC GCCCTGTTTT TCCTGGCCTT CGTGCCACAA
TTTATCGCCT ATGATTCCCC GAACAAAGCG CTGTCATTCA TCATTTTAGG TTTGATATTT
ATCTTTAATG GCATGGTCTG GTGTCACTTT CTAGCGTGGA GCTCCTCTTC ATTGAGTCGT
AAAGTAAAAC ATAGTTCATT CCTGAGCCAT TGGTTGAATA AAATTGCAGG TACTCTGTTT
ATCGGCTTCG GGATCAAGTT GGCACTCGGT CAGCAGACCT GA
|
|---|
| Protein sequence | MSRLGINDIW LFVLSGIALN IMPGPDSLYI VGRSATQGFR GGSMASWGIA TGTLVHILAA
AFGLSAILAT SAMAFTVIKV VGCCYLIYIG LTMLLSRRGA ATQDVKDQAP TSLYRIYSQG
FLTNVLNPKI ALFFLAFVPQ FIAYDSPNKA LSFIILGLIF IFNGMVWCHF LAWSSSSLSR
KVKHSSFLSH WLNKIAGTLF IGFGIKLALG QQT
|
|---|
| |