| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3928 |
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| Symbol | |
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| ID | 5612581 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4798053 |
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| End bp | 4799336 |
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| Gene Length | 1284 bp |
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| Protein Length | 427 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640934882 |
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| Product | (S)-3-amino-2-methylpropionate transaminase |
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| Protein accession | YP_001475660 |
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| Protein GI | 157377060 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0160] 4-aminobutyrate aminotransferase and related aminotransferases |
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| TIGRFAM ID | [TIGR00700] 4-aminobutyrate aminotransferase, prokaryotic type |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACCAACA GCAATTTACA GGCGCGCAAA GCCAAGGTGA TGCCCCGTGG CCAGGGTAAT
GTCTATCCTG TGTATGTCGA GCGTGCTAAG AATGCCGAAC TTTGGGATGT GGAGGGCAAG
CGATATATCG ATTTCGGAAC GGGGATCGCG GTGTGTAATA CCGGCCATAG CCATCCTAAA
ATTGTAGCTG CTGTTAAGGC TCAGTTAGAT AAGTTCAGCC ATACCTGCGT TATGATCAAC
CCCTATGAGT CGGCGGTAGA ATTGGCCGAA AAACTCACGG CGATCGCGCC GGGTGATAGC
GAAAAGAAAG CCATCTTTGT GACAACTGGG GCGGAAGCGG TAGAAAACTG TGTCAAGATT
GCCCGCGCCC ATACCGGTCG AAGAGGGGTT ATCGCCTTTA ACGGTGGTTT CCACGGTCGA
ACTAACTTAA CGATGGCATT AACAGGCAAG ATCAGTCCCT ATAAGCAGCT GTTCGGCCCA
TTTGCCGGTG ATATTTACCA TGCCCCCTTT CCGATGGCCT TCCATGATGT TTCGGTAAAG
GATTCGCTTA AGGCGCTGGA AAACCTGTTT AAGGTGGATA TTGCTCCGAG CGATGTCGCG
GCCATAATCG TAGAGCCTGT GCAGGGCGAG GGCGGCTTCT ATGCCGCGCC AAGTGAGTTT
TTACAGGCAC TGCGTCGGCT ATGCGATCAA CATGGTATCG TCTTGATTGC CGATGAGATC
CAAACCGGAT TTGGCCGTAC CGGTAAGATG TTCAGTTTTG AACACGCGAA CGTCGAAGCA
GATCTGATGA CCATGGCGAA AGGGATCGCC GGTGGCTTTC CTATCGCGGC CGTCGTGGGC
AAGAGTGAGA TTATGGACGC GCCTCTGCCC GGAGGTTTAG GTGGTACCTA TGGTGGCTCT
CCCGTGGGCT GCGTCTCTGC GCTGGCGGTA TTGGAGGTGA TGGAGGAGGA GAACCTGGTT
CAGCGAGCAT CGCTTATTGG CAGTATCTTC AATGAGCATC TTACTTCACT TCAAAATAGA
TATCCGGATC TGATCGGTGA AGTTCGTCAT CAGGGGGCGA TGATCGCCCT GGAGCTGGTC
ATCGATGGAG ATGCTGACAA GCCAAATACT GAGCTCACTC AAGCTATTAT CGGTAAAGCG
GCGGAGCATG GGCTGATTCT CCTGGCCTGC GGTTTCTATG GCAATGTGAT TCGTTTCTTG
CCGGCTCTGA CTATCTCAGA TGAGATAATC TATGAAGGCT TAGATAAGTT CAATAGTCTG
TTTAATGAGC TTGCGGGAAG TTAA
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| Protein sequence | MTNSNLQARK AKVMPRGQGN VYPVYVERAK NAELWDVEGK RYIDFGTGIA VCNTGHSHPK
IVAAVKAQLD KFSHTCVMIN PYESAVELAE KLTAIAPGDS EKKAIFVTTG AEAVENCVKI
ARAHTGRRGV IAFNGGFHGR TNLTMALTGK ISPYKQLFGP FAGDIYHAPF PMAFHDVSVK
DSLKALENLF KVDIAPSDVA AIIVEPVQGE GGFYAAPSEF LQALRRLCDQ HGIVLIADEI
QTGFGRTGKM FSFEHANVEA DLMTMAKGIA GGFPIAAVVG KSEIMDAPLP GGLGGTYGGS
PVGCVSALAV LEVMEEENLV QRASLIGSIF NEHLTSLQNR YPDLIGEVRH QGAMIALELV
IDGDADKPNT ELTQAIIGKA AEHGLILLAC GFYGNVIRFL PALTISDEII YEGLDKFNSL
FNELAGS
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