| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3912 |
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| Symbol | |
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| ID | 5610020 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4779334 |
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| End bp | 4780797 |
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| Gene Length | 1464 bp |
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| Protein Length | 487 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640934866 |
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| Product | UDP-N-acetylmuramate |
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| Protein accession | YP_001475644 |
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| Protein GI | 157377044 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0773] UDP-N-acetylmuramate-alanine ligase |
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| TIGRFAM ID | [TIGR01081] UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCCTCCC CAAGCGATAG AATACCCCTC AGATTATTCC TCATCAGAGC CAACCTCATG
CATGTACACA TCTTAGGCAT CTGCGGCACC TTTATGGGTG GTCTAGCACT GCTAGCCAGA
GCCGAAGGCC ACAAGGTTAC TGGCAGCGAT GCCAACGTCT ATCCGCCGAT GAGCACTCAG
CTCGAAGAGC AGGGCATCGA GCTTATTCAG GGCTTCGATC CGAGTCAGCT CGGGAAAAAC
GAAGATGATG CGCCGGATCT GGTGGTTGTT GGCAACGCCA TGAGCCGTGG TAACCCATGT
GTCGAGGCGG TATTGAATCG CGGCCTCAAG TACACCTCAG GGCCACAGTT TCTGGCCGAA
CATATTCTCC CAAACCGTTG GGTGCTGGCG GTATCTGGAA CCCATGGTAA AACCTCGACC
TCGAGTATGC TGGCATGGAT TTTAGAAGAG TGCGGCTATG AGCCGGGCTT CTTGATCGGT
GGCGTACCGC AAAACTTTGG CGTGTCTGCG CGTCTGGGTA ACTCGCCATT TTTTGTGGTA
GAAGCCGATG AGTATGACAG TGCCTTCTTC GATAAGCGTT CCAAGTTCGT CCACTATCAG
CCCCGCACTC TGGTGATCAA TAATCTGGAG TTCGATCATG CGGATATCTT CGACGACTTA
AAAGCGATTC AACGTCAGTT CAACCACGTG ATACGCACCG TACCCGGTCA GGGGAAAATT
ATTTGGCCGA AGGACAGTGA AGCGGTGCAG CAGGTGATAG AGATGGGCTG CTGGAGCGAG
CAGGAGACCT ATACTAAGAG TCAGAGTCGT GGGCCTAAAG CGATAGAGCA ACAAGCGCCA
GCTCAAGGTT GGTCGACTCA ACTTATTGCC GATGATGGCC ATAAGTTTGA GCTGTTCTTT
AATGGCGACT CCCAGGGCAT CTTGGATTGG AGCCTTATCG GCCAGCATAA TGTCGAGAAC
GCCACCATGG CAATTGCTGC GGCGCTTCAT GTGGGCGTAC AGCCTGAAGT GGCTATCGAA
GCGCTCACCA AGTTTTCGCC ACCTAAGCGC CGCATGGAGC TTATCGGTAC GGTGAACGGG
ATTGAAGTCT ATGATGACTT TGCCCACCAT CCGACAGCGA TTGCGACAAC CCTGCAGGGA
ACTCGCGCTA AGGTCGGTGA GGGTAAGATC ACCATTATTT TAGAGCCACG CTCTAATACC
ATGAAAAGTG GTGTGCATAA GGATACCTTA GCCGATTCGA TGAAGCTTGC CGATGAAGCC
TATCTTTATC AGGCAGACAA CATCGGCTGG GATGTGAAGG CGGCGATGGA AAAAGCCGAA
CTGCCAGTCA CTGTGCTATA CCAAATAGAT GAAATAATCG ATGCCGTGGC CAGTAAGGCA
AAGTCCGGTG ACACCATCAT AGTGATGAGC AATGGCGGCT TCGGTGGCTT GCATCAGAAG
CTGTTAGCTA AATTAAGTAC CTAG
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| Protein sequence | MASPSDRIPL RLFLIRANLM HVHILGICGT FMGGLALLAR AEGHKVTGSD ANVYPPMSTQ
LEEQGIELIQ GFDPSQLGKN EDDAPDLVVV GNAMSRGNPC VEAVLNRGLK YTSGPQFLAE
HILPNRWVLA VSGTHGKTST SSMLAWILEE CGYEPGFLIG GVPQNFGVSA RLGNSPFFVV
EADEYDSAFF DKRSKFVHYQ PRTLVINNLE FDHADIFDDL KAIQRQFNHV IRTVPGQGKI
IWPKDSEAVQ QVIEMGCWSE QETYTKSQSR GPKAIEQQAP AQGWSTQLIA DDGHKFELFF
NGDSQGILDW SLIGQHNVEN ATMAIAAALH VGVQPEVAIE ALTKFSPPKR RMELIGTVNG
IEVYDDFAHH PTAIATTLQG TRAKVGEGKI TIILEPRSNT MKSGVHKDTL ADSMKLADEA
YLYQADNIGW DVKAAMEKAE LPVTVLYQID EIIDAVASKA KSGDTIIVMS NGGFGGLHQK
LLAKLST
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