| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3901 |
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| Symbol | |
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| ID | 5611343 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4770535 |
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| End bp | 4772025 |
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| Gene Length | 1491 bp |
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| Protein Length | 496 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640934855 |
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| Product | polynucleotide adenylyltransferase |
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| Protein accession | YP_001475633 |
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| Protein GI | 157377033 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0617] tRNA nucleotidyltransferase/poly(A) polymerase |
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| TIGRFAM ID | [TIGR01942] poly(A) polymerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000197413 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTGATCA ATCGTATACT CATTGAGCCA TATTTGGGGT ATCATAGCCG ACTTATTTTA
AATCGCAGTT CAGTTCCAAG TTCGAGGTGT CCCATTTTTC GCCGTATTAG CAAATTCTGT
AAGCAGTTCT TTGATGATAA TCAAACAGCT GAAGAAACCA CACAAACAGG CCTAAGTTTG
GAGGTTGTCC CGAGACAAGA TCACTCGATA TCTCGCAGAC AGATGAGCGA AAATGCCATA
AAGGTACTAT ATCGATTGCA TAAGTCCGGA TTTAAGGCTT ATCTCGTCGG TGGAGGTGTG
CGTGACATCC TGTTGGGATT ACAGCCTAAA GATTTCGATG TGGTGACCAA TGCCACACCG
GAAGAGATCA AGAAACTCTT CCGTAACTGT AGACTCGTCG GTAGACGTTT CCGTCTGGCC
CATATTGTCT TTGGCCGAGA TGTCATCGAA GTCGCGACCT TGCGTGGTCA TCATGTTGAA
CATGTCGAGC AGGTTTCAAA AACCAATGCC GAAGGCCGAC TGCTACGAGA TAATGTCTAT
GGCACCATAG ATGAAGATGC GGAACGTCGT GACTTCACCG TCAACGCGCT TTATTACGAT
ATCAGTGACT TCTCTATACA CAGTTATGGA GGCGGACTGG AAGATCTAAA ATCGAGAACA
ATTCGATTAA TTGGCGACCC TAACACCCGC TATCGTGAAG ACCCGGTACG TATGCTCCGA
GCCGTCCGCT TCGCGACTAA GCTCGACATG ACTATCGATA AAGGTGCGGC CGATCCTATC
TATGAATTGG CTCCACTGCT GAAAGATATT CCTGCTGCGC GCATGTATGA AGAGATACTC
AAACTCTTCT TCAACGGCCA GGCTGCAAAT AACTTTACCA TGATGCGTGA GTTTGGCCTG
TTTGCGCCAC TCTTCCCTCT GGTAGATTCA CAACTTGTGG ATGAGCCAGA CGGCTTTGCG
GCGAAAATGC TTCAGGCTGT TATGGAAAGT ACCGATTCGA GAGTTCGCGC AGAGAAGACG
GTAACGCCCG CATTCTTCTA TGCCGCCATT CTCTGGTACC CATTGAGCCA ACGTGCCGAT
GATATCGCAC TGGAAAGCGG ACTAAGCCTT TATGATGCAT ATAATGCCGC TATGGGTGAT
GTCATGGAGC AGCAATGCCG AACTATCAGC ATCCCGCGTC GTTTCAGTAC TCCGGCAAAA
GATATCTGGC AGTTACAGCT AAGGTTCGAT CGTAACCAAG GCACACGCGC ATTTAAATTT
ATCGAACATC CCAAGTTCCG CGCGGCCTAT GACCTACTCC TGTTGAGAGC CGATGCCGAA
GGTGGTTCGG TGGCAAAATC TGCCGCATGG TGGAAGAGCT TCGTCGAAGG TGGCGAAGAG
CAGCGTAATG TCATCGCACG CTCGGCAAAC AAGGGCAGCC GTAACCGTAA TTCGAACCAA
CGCAGACGTC GTAAGCCTGC ATCAAAAAAA ACGACTAAGC CGGCAGAGTA A
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| Protein sequence | MVINRILIEP YLGYHSRLIL NRSSVPSSRC PIFRRISKFC KQFFDDNQTA EETTQTGLSL
EVVPRQDHSI SRRQMSENAI KVLYRLHKSG FKAYLVGGGV RDILLGLQPK DFDVVTNATP
EEIKKLFRNC RLVGRRFRLA HIVFGRDVIE VATLRGHHVE HVEQVSKTNA EGRLLRDNVY
GTIDEDAERR DFTVNALYYD ISDFSIHSYG GGLEDLKSRT IRLIGDPNTR YREDPVRMLR
AVRFATKLDM TIDKGAADPI YELAPLLKDI PAARMYEEIL KLFFNGQAAN NFTMMREFGL
FAPLFPLVDS QLVDEPDGFA AKMLQAVMES TDSRVRAEKT VTPAFFYAAI LWYPLSQRAD
DIALESGLSL YDAYNAAMGD VMEQQCRTIS IPRRFSTPAK DIWQLQLRFD RNQGTRAFKF
IEHPKFRAAY DLLLLRADAE GGSVAKSAAW WKSFVEGGEE QRNVIARSAN KGSRNRNSNQ
RRRRKPASKK TTKPAE
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