| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3900 |
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| Symbol | |
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| ID | 5611285 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4769534 |
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| End bp | 4770451 |
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| Gene Length | 918 bp |
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| Protein Length | 305 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640934854 |
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| Product | glutamyl-tRNA synthetase, class Ic |
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| Protein accession | YP_001475632 |
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| Protein GI | 157377032 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0008] Glutamyl- and glutaminyl-tRNA synthetases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000243108 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATCGTTA TCAGTTCTAT CCCATTAGTT ACAGGTTTCG TCACTTTGAT TCACTCCCCT
TACATTGGCC GTTTCGCTCC CTCACCCTCG GGCCCGCTCC ACTTCGGCTC GCTGGTAGCC
GCGGTAGGCA GTTTTCTGCG AGCTCGATCT ATGGGGGGTC AATGGTTAGT TCGCATTGAA
GATATCGATC CTCCTCGAGA GGTGCCGGGG TGCAGTGATG ATATCTTACG AACGCTGCTC
GCCTATGGTC TGGAATGGGA TGGCGAGGTC TTGTATCAGA GTCAGCGTCT CGATGCCTAT
CAGGCAAGGC TAGATAGCCT GATGGCCAAC GATCTAGCTT ACTATTGTCA ATGCACACGC
AAACAGATCC ACGCCATGGG TGGAAGCTAT GATGGTCGCT GCGGCGCACT GGAAACGTCT
TTGGATCATG GTGCGATCAG AATTCGCAAT ACTGTCGGCA TAGATAAATT TCAAGACACC
TTAATGGGTG AGATACACTT AGATAAAGCC TTTGCCAATG AAGACTTTAT TATTAAACGC
AGTGATGGGC TCTACGCCTA TCAATTGGCC GTCGTCATGG ATGATGACTT TCAGCAGATA
ACCGAAGTCG TTCGTGGCAG TGATCTGTTA GAGACCAGCT GCAGACAGGA GAGCCTGTTT
GCTCTGTTTG GTTTAACCCC GCCGACCTGG CTACACCTTC CCTTAGTCTG CACCACACCG
GGCATGAAGC TTTCGAAGCA GAACCATGCA CCTGCTATCG ACATCGATCA GCCACAGACG
AGCCTGAATG CAGCGCTTCA ATTCTTAGGT CAGCCGCAGG TCGAGCCCAG ACAACAGATG
CACCTGATGC TTGAGCAGGC CATCTCACAA TTTGATATCG ACCTCATTCC CAAACAAACA
GAGATCATAC TCAGTTAA
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| Protein sequence | MIVISSIPLV TGFVTLIHSP YIGRFAPSPS GPLHFGSLVA AVGSFLRARS MGGQWLVRIE
DIDPPREVPG CSDDILRTLL AYGLEWDGEV LYQSQRLDAY QARLDSLMAN DLAYYCQCTR
KQIHAMGGSY DGRCGALETS LDHGAIRIRN TVGIDKFQDT LMGEIHLDKA FANEDFIIKR
SDGLYAYQLA VVMDDDFQQI TEVVRGSDLL ETSCRQESLF ALFGLTPPTW LHLPLVCTTP
GMKLSKQNHA PAIDIDQPQT SLNAALQFLG QPQVEPRQQM HLMLEQAISQ FDIDLIPKQT
EIILS
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