| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3894 |
|---|
| Symbol | |
|---|
| ID | 5611702 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 4760183 |
|---|
| End bp | 4762546 |
|---|
| Gene Length | 2364 bp |
|---|
| Protein Length | 787 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640934848 |
|---|
| Product | peptidoglycan glycosyltransferase |
|---|
| Protein accession | YP_001475626 |
|---|
| Protein GI | 157377026 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
|---|
| TIGRFAM ID | [TIGR02071] penicillin-binding protein 1B |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACAGA AAGAGACAAC AAAGAGAGCG GCTAAGAAGC CAGCCCCTAA AAAAAGTGCG
GCTAAAGCTA AGCCTAAAAG AAAAAAGCGC GCATCGAAGA AACCATCATC TCCGGGCTGG
GGACGTCGTA TCTGGTCGAT AAGCTGGAAG TGTGCGCTTA TCCTGATAGC GGCGGTTTTT
ATCTATGGGA TCTATCTGGA TCAGATCATC GCCCGCAAAT TTGAGGGACA GAAGTGGCAT
CTGCCCGCAC AGGTATTCAG CCGCTCCATG GCCCTCTATC CGGGCGCAGC GGTGAGTCAT
AACCAGCTCA TTGCAGAACT TAAGTTGCTC GGTTACCGCA AGGTCACTAA CCCGAGGCAG
GTCGGCGAGT TTTCGGCCTC GAAAACTAAG GTCGATCTGT GGCGCCGCCC CTTCCTGCAC
CCACAAGGTT CTCAGGCGGA GCAGAGGGTG ATGATCACCT TCGACTCTCA GGGTGTCAGC
TCGGTTTCCA GAAGCAAAGA TCGGCGTCAG TTAGCGGTTT TTCATCTCGA ACCTGTGTTG
CTCGACCGTA TTCTTACCGG GGATGGTGAA GACAGATTAT TTGTGCCGGC GCAAAAGATC
CCACAACCGA TTATCGATGC CCTTATCTTA GTGGAAGATC GCAGCTTCTA TGAGCATCAT
GGCGTCAATC CGTTTGCGAT TGTCAGGGCA TTGATGGTTA ACATCAGCGC CGGAAGGACG
GTGCAGGGGG GCTCGACCCT GACTCAGCAG CTGGCTAAAA ACTTCTTCCT CTCCAGTCAG
CGCTCACTGG TGCGAAAAAT TCGGGAAGCC TTGATGGCGG TGATCATCGA TTTCCGATAT
GACAAGGATG AGATCTTAGA AGCCTACCTC AATGAAGTGT ATATGGGGCA AGATAAGGCT
CGTGGCGTAC ACGGTATGGG GCTGGCCTCT CAGTTCTACT TCGGTCGCCC GATTGCCGAG
CTGACCTTGC CGCAACAGGC CTTTCTGGTG GCGGTGATTA AGGGGCCCTC CTATTACAAC
CCATGGCGAT ACCCTGAGAG AGCACAGCAG CGAAGAGACT TGGTCTTGAG GCTATTGATG
GAGGCGGATC AACTCAATGT CGCTCAGTAT ACGGCGGCGG TCGAATCCCC TCTGGGGCTG
CGTAAAGCGG ATAAGCCTGT ACACCAGAAG CTGCCGGCAT TCTTTGCCGT GGTGCAGCAT
GAGCTGGCGA GACGCTTCGG TGACTCTCTG CTTAAGCAGT CCGGGATAAA GGTCTATACC
ACTCTCGATC CTATGGCTCA GGAAGCCGCG GAAAAAGCGG TTAAGAAGAC CATGGCACGC
TTAGGCAAGA GTGATAAATC TCTGCAGGTA GGTATGGTTG TTACCGACAA ATACTCTGCC
GGTATTGCCG CCATGGTTGG CGACAAGGTA CCCGGATATA AAGGGTTTAA CCGCGCCGTA
GAAATACGTC GTCCTATCGG TTCTTTGGTA AAGCCATTCG TCTATGCCAC GGCGCTGAGT
CATGGCGACA AATACAACCT GGCGACGCCG ATAAAAGATC AGCCCATCAC GCTCAAGAGT
GGTCAGGGGA AAAGCTGGTC GCCTAAGAAT GTGGATAAGC AGTTCAGGGG AGAAGTACCC
CTGTTAACCG CCTTTAAGAA ATCGATCAAT GTGCCTACGG TCAATTTAGG CATGGCTATC
GGTGTGGGCA GTGTGGCGAC CACATTAGAT AAGGCGGGTT GGCGGGATAA GATCCCTGAG
TATCCCTCTA TGTTGCTTGG CGCGGTAAAT GGTTCTCCCT TGATGGTAGC GCAGGTATTT
CAGACCATCG CCGACAACGG TCGTTACCGA AAGCTAAGCT CGATCACTTC GGTGTTGGAT
ATGGATAATA ATCCGTTGCC GGCATCGCCG ATAACACCTG TTCAGGCACT GGATCCTGCA
ACTAACTATC TGGTGCAGTA TGCGATGACA CAGGTGGTGG ACTCAGGCAC CGCCTCCAGA
CTGGGCAAAG CCTTCCCGCG CACCACACTG GCAGGCAAGA CCGGAACCAG TAATGACTCC
CGGGACTCCT GGTTTGCCGG TTTCGATGAG CGTAATGTCG CCGCAATCTG GGTTGGCCGT
GATGACAACG GCAAGACGAA GCTCTATGGC AGCAGCGGCG CCATGGCCGT GTATCAGGAC
TTCTTAGGTG ACAGGCCGCC TATCAGTCTG AGAAGAACGC CGATCAATGG CGTTGTTAAC
GGTCATTTCG AGCGCACCAC CGGTGTAGCC AAGCAGGCGG GCTGCGAGAA CTCGATTGCA
CTGCCAGCGC TGGAGTCCAG TTACCACCCG GCGAAGAACT GCGGCGAGCC CCTTTCCTGG
TGGCAGAAGC TCACGGGTGG ATAA
|
|---|
| Protein sequence | MTQKETTKRA AKKPAPKKSA AKAKPKRKKR ASKKPSSPGW GRRIWSISWK CALILIAAVF
IYGIYLDQII ARKFEGQKWH LPAQVFSRSM ALYPGAAVSH NQLIAELKLL GYRKVTNPRQ
VGEFSASKTK VDLWRRPFLH PQGSQAEQRV MITFDSQGVS SVSRSKDRRQ LAVFHLEPVL
LDRILTGDGE DRLFVPAQKI PQPIIDALIL VEDRSFYEHH GVNPFAIVRA LMVNISAGRT
VQGGSTLTQQ LAKNFFLSSQ RSLVRKIREA LMAVIIDFRY DKDEILEAYL NEVYMGQDKA
RGVHGMGLAS QFYFGRPIAE LTLPQQAFLV AVIKGPSYYN PWRYPERAQQ RRDLVLRLLM
EADQLNVAQY TAAVESPLGL RKADKPVHQK LPAFFAVVQH ELARRFGDSL LKQSGIKVYT
TLDPMAQEAA EKAVKKTMAR LGKSDKSLQV GMVVTDKYSA GIAAMVGDKV PGYKGFNRAV
EIRRPIGSLV KPFVYATALS HGDKYNLATP IKDQPITLKS GQGKSWSPKN VDKQFRGEVP
LLTAFKKSIN VPTVNLGMAI GVGSVATTLD KAGWRDKIPE YPSMLLGAVN GSPLMVAQVF
QTIADNGRYR KLSSITSVLD MDNNPLPASP ITPVQALDPA TNYLVQYAMT QVVDSGTASR
LGKAFPRTTL AGKTGTSNDS RDSWFAGFDE RNVAAIWVGR DDNGKTKLYG SSGAMAVYQD
FLGDRPPISL RRTPINGVVN GHFERTTGVA KQAGCENSIA LPALESSYHP AKNCGEPLSW
WQKLTGG
|
|---|
| |