Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3889 |
Symbol | |
ID | 5611185 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 4752707 |
End bp | 4753894 |
Gene Length | 1188 bp |
Protein Length | 395 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640934843 |
Product | phosphate-selective porin O and P |
Protein accession | YP_001475621 |
Protein GI | 157377021 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.00000019269 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.000370882 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGATGATGA AAAAGACACT GATAGCAACC GCACTGGTTG GCCTTTTCGC CAGCCAAACT GCATTTGCTT CTGAAGAGAC TCAAGAATTA CGTAAAGTGA TCGAGCAGCA GCAAAAGGTG CTACAAGATC TGGAACGTCG TCTCGAAGCC ACTGAAACTC GTGTTGAGAA GACAGCCGAT GTCGTAGAAG AGGTTGCTGA GTCTAAGAGT GCAACAACTA TCGGTGGTTA TGGTGAACTT CACTACAACA ACATTACCGA TAACAAGTCT GGCAGCGATA AAAAATCAAT CGATTTCCAC CGTTTCGTAT TGTTCTTCGG CCATGAGTTC AGTGAAAAAA CACGTTTCTT CTCTGAAGTT GAGCTTGAAC ACTCACTTTC CGGTGATGGT AAGCCAGGTG AAGTAGAGCT TGAGCAAGCC TATATTGAGC ATGACTTCAG CGAGATGTTT ACCGGTAAAG CGGGTCTGTT CCTGATGCCT GTCGGTATCA TCAACGAAAC ACACGAGCCA CCAGCATTCT ATGGCGTCGA GCGTAACCCG GTTGAGAAAA ACATTCTTCC GGCAACTTGG TGGGAAGCCG GTGCAGCACT TAATGTAAAG GCCGCTCCAG GTCTGGCATT CGATGGTGCA GTAACCAGTG GTCTTGAAGT TGCTACTGAA GGCAGTAAAG CCTACAACAT CCGTAGCGGT CGCCAGAAAG TAGCTAAGGC AAATGCTTCA GATCTTGCTT ACACGGCGCG CGCTAAATAC ACAGGCGTTC CAGGTTTAGA GCTTGCTGCA ACCGCTCAAT ACCAAGCAGA TATCACTCAG AGTGCAGGTG GCGTAGACAC AGCCTCTGCA ACTCTTTTGA CTGCTCACGC TATCTACAGC ATCCAGGGTT TCACAGTTAA AGCCCTTTAT GCTCAATGGG ATATCGATGG TAACGAAGCA GAAGCCTTAG GTCGTGATGA GCAAAACGGT TGGTACATCG AGCCTTCATA CCGCTTCAAC GAAAGCTTCG GTCTGTTTGC TCGCTACAAC GAATACGACA ACGAAGCTGG TAACAGCGAA GACACTAAAA TTGAGCAAAC CAACGTAGGT ATTAACTACT GGTTGCATGA GAACGTGGTA TTCAAGGCTG ACTACGAAAA AGTTGGCGGC GCTAAAGATT CAGACGGTTT CAACCTGGGT GTAGGTTACC AGTTCTAA
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Protein sequence | MMMKKTLIAT ALVGLFASQT AFASEETQEL RKVIEQQQKV LQDLERRLEA TETRVEKTAD VVEEVAESKS ATTIGGYGEL HYNNITDNKS GSDKKSIDFH RFVLFFGHEF SEKTRFFSEV ELEHSLSGDG KPGEVELEQA YIEHDFSEMF TGKAGLFLMP VGIINETHEP PAFYGVERNP VEKNILPATW WEAGAALNVK AAPGLAFDGA VTSGLEVATE GSKAYNIRSG RQKVAKANAS DLAYTARAKY TGVPGLELAA TAQYQADITQ SAGGVDTASA TLLTAHAIYS IQGFTVKALY AQWDIDGNEA EALGRDEQNG WYIEPSYRFN ESFGLFARYN EYDNEAGNSE DTKIEQTNVG INYWLHENVV FKADYEKVGG AKDSDGFNLG VGYQF
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