| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3888 |
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| Symbol | |
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| ID | 5611184 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4750247 |
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| End bp | 4752439 |
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| Gene Length | 2193 bp |
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| Protein Length | 730 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640934842 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001475620 |
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| Protein GI | 157377020 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4772] Outer membrane receptor for Fe3+-dicitrate |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000154411 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00438264 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGCCGCACC CTAAAACCTT GTCACTCAGC CTGCTTTCCA CGGCGCTACT TAGCGCACTG
TCAACCTCAT CGTTCGCTCA GGAAATTCAA GGCGATGAAC ATGCCAGCCC GATGGAGCAG
ATCAGCATTT TTGGCAAGCG AAACCCGCTC AACACAGTTC CGGGAAGTGG ACATCAGATC
ACCGAGGCGC AGCTCGATAC CTTTAAATAC ACAGATATTA TGCGCACTCT TTCATCGGTT
CCGGGTGTAT ATATTCAGGA GGAAGATGGT TATGGTCTTC GCCCAAATAT CGGTATGCGT
GGCACGGGGC AAAACCGCTC TGAGAAGGTC ACCATCATGG AAGATGGCGT TATCGCAGCC
CCAGCCCCTT ATGCTTCTTC TGCAGCCTAC TACTTCCCAA CATCTGGCCG CATGGAGTCA
GTTGAGATTC TTAAAGGTAG CTCAACGGTT AAGTATGGTC CCCGCACCAC AGGCGGCGTG
ATCAACATGC TATCGAGGCA GATCCCTGAG GAGGAGTTAG CCGGTAAGCT GCATATCGCA
GCAGGACAGG ATGGCTTCGG AAAACTGCAT GGCTATGCAG GCGGCCAGGG AGAGCGCGTA
GGCGCTGTTG TCGATCTATA TCGTTATCAG GCCGACGGCT TTAAAGATAT CAATGGCGTA
GGCGGTGACA CCGGCTTCAA GAAGAACGAT GCCATGGCCA AGTTCAGCGT ACGCTCAGCC
AAAGATGCCA AATACGATCA GGTACTGGAA TTTAAGCTTA AGTATTCAGA TGAAACATCT
AACGAGACCT ATATGGGCCT CACCGATGAA GACTTTTCAG CAAACCCTTA TAACCGTTAC
TCGGCATCAC AAAAAGATGT GATGAACACC GAGCATAAGC AGCTGCAGAT CAACCACATT
ATCGACTTCA GTGACAACGT CACCTTAGGT ACTACGGTTT ACCATAACGA CTTTAAGCGT
AACTGGTACA AGACCAACAA GGTTAACGGT GAAAAGATCA GTGGTGATGG TACCCAGATA
GCTTCTGATT TCGATAAAGA TCCCACCTCA GGTGATCTTG AGGTCGATGT TAAAGCTAAC
AACCGTGCCT ATATTTCACA GGGTATTCAA ACCGAACTTA ATTGGTACTT AGATAGCCAT
GAGATAGCCT TCGGTGCTCG CTACCACGAA GATGAGATGG ACAGGTTCCA GTGGGTTGAT
ACTTACACTA TGGGATCGAA CCAAGTGATG GTGATGTCCG AAGCTGGCAC CCCTGGAACC
GACTCTAACC GTATCGACAG CGCTGAAGCT TTAGCACTTT ATCTACAAGA TAAAATAAAC
TTCGGTGACT TTAATATCAC CGCAGGTGTG CGCTACGAAG ATGTTACCAC CAACCGCCGC
GACTGGGGTA AAGAGAACCC TGGACGTGAC GGCGAGCCAG ATAAGGTAAA AGACAATAGC
TTCTCGGCGT TCATGCCTTC GCTATCAGCC ACATACCAAG TTAACGATGC CCTACTTGTA
CTTGCTGGCG TTCAGAAAGG TTTCTCACCT TCATCGCCAG GCAATAGCCA AGGTGAAGAG
GAGGAGAGCT GGAACTATGA AGCTGGTGCC CGTTACAACA GTGGTGAGCT AACTTCTGAA
GCGATATTCT TCTACAGTGA CTACAGTAAT ATGCACGGTG ACTGCACTGA GTTCGCTGGT
TGTAATGATG AAAATATTGG TGATCAGTAC AACGCAGGTG AAGTTGATAT TAAAGGCCTG
GAGCTTAGCC TGGGGTATAA CTTCAATAGT GACGGTCAGG TCAACTTCCC AGTCAAACTT
GCTTACACCT ACACCAATGC AGAGTTTGGT AATAGCTTCG AATCTGATTT TTGGGGTGAT
GTTGAGAAGG GCTACGCACT ACCTTACCTT GCTGAAAACA TCCTATTTGC CTCGGCAGGT
GTTGCAGGTG ACAACTGGGA GCTAACCTTA GCGGCACGCT ACACAGATGA TATCCGTACA
GAGGCCGGTG AAGGTAGCAT CCCAAGCGAT GAGCTAATCG AAGCGAGAAC CATAGTCGAT
CTTTCTGGAC GTTATTTTAT CTCAGAAGCT CAGGAAGTTT ACCTGACAGC CGAGAACCTG
TTTGACGAGC AATATGTCGC AACTAAGATT CACGGTTCAA GCTCAGCGGG TAAGCCAATG
ACAGTAACTG TCGGATATTC GTACAAGTTC TAA
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| Protein sequence | MPHPKTLSLS LLSTALLSAL STSSFAQEIQ GDEHASPMEQ ISIFGKRNPL NTVPGSGHQI
TEAQLDTFKY TDIMRTLSSV PGVYIQEEDG YGLRPNIGMR GTGQNRSEKV TIMEDGVIAA
PAPYASSAAY YFPTSGRMES VEILKGSSTV KYGPRTTGGV INMLSRQIPE EELAGKLHIA
AGQDGFGKLH GYAGGQGERV GAVVDLYRYQ ADGFKDINGV GGDTGFKKND AMAKFSVRSA
KDAKYDQVLE FKLKYSDETS NETYMGLTDE DFSANPYNRY SASQKDVMNT EHKQLQINHI
IDFSDNVTLG TTVYHNDFKR NWYKTNKVNG EKISGDGTQI ASDFDKDPTS GDLEVDVKAN
NRAYISQGIQ TELNWYLDSH EIAFGARYHE DEMDRFQWVD TYTMGSNQVM VMSEAGTPGT
DSNRIDSAEA LALYLQDKIN FGDFNITAGV RYEDVTTNRR DWGKENPGRD GEPDKVKDNS
FSAFMPSLSA TYQVNDALLV LAGVQKGFSP SSPGNSQGEE EESWNYEAGA RYNSGELTSE
AIFFYSDYSN MHGDCTEFAG CNDENIGDQY NAGEVDIKGL ELSLGYNFNS DGQVNFPVKL
AYTYTNAEFG NSFESDFWGD VEKGYALPYL AENILFASAG VAGDNWELTL AARYTDDIRT
EAGEGSIPSD ELIEARTIVD LSGRYFISEA QEVYLTAENL FDEQYVATKI HGSSSAGKPM
TVTVGYSYKF
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