| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3886 |
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| Symbol | |
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| ID | 5611182 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4746969 |
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| End bp | 4748348 |
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| Gene Length | 1380 bp |
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| Protein Length | 459 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640934840 |
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| Product | amino acid carrier protein |
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| Protein accession | YP_001475618 |
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| Protein GI | 157377018 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1115] Na+/alanine symporter |
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| TIGRFAM ID | [TIGR00835] amino acid carrier protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00728667 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.343174 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATTTTC AACTCTTAAT CGCCGACCTG CTGGCTAATG TTAACGCCAT CGTTTGGGGA
CCTATTACCT TATGCCTCCT GGTGGGTACG GGACTCTACC TCACCGTGAG ACTCAAGCTT
ATTCAGGTAT TTCGCCTGCC TTTAGCGCTG AAGCTATTAT TTAAACCCGC GACGGGTAAA
GGGGACCTCT CGTCCTTTGC CGCCCTTTGT ACTGCTCTCT CTGCCACAAT CGGTACCGGT
AATATTGTCG GTGTCGCCAC CGCTATCAAG ATAGGTGGCC CCGGCGCCCT GTTTTGGATG
TGGCTAGCGG CATTCTTCGG TATGGCCACC AAGTATGCCG AGTGTATGTT GGCGGTAAAG
TATCGCACCA CAGATGCAAG GGGACGGATA GCCGGTGGCC CCATGTACTA TATCGAGCGT
GGTCTGGGAC TTGGCTGGAT GGCTAAATTG TTCGCCGTGT TTGGTGTCGG TGTCGCTTTC
TTCGGTATCG GTACCTTTGC GCAGGTCAAC GCTATCAGCG ATGCCATGTC CATTGCCTTC
CATGTGCCGA CTTGGGTAAC GGCTCTGGTG TTAACCGTGC TCGTCGCGGC GGTCACTCTG
GGTGGGGTTA AGCGTATTGC CAATGTGGCG CAGAGGCTGG TACCGACCAT GGCGCTGGGC
TATGTGCTTG CCTGTGTGTG GATCTTAATC GCTTTCTCAG ATCAGATTCT GCCGGCATTC
GGGTTAATTA TTGAGTCTGC CTTTACACCT ATCTCTGCCG CCGGTGGCTT CCTCGGGGCG
ACGGTAGCAC AGGCGCTGCA AATAGGTATT GCCCGCGGAG TGTTCTCAAA TGAAGCGGGA
TTGGGTAGCG CGCCGATCGC CGCTGCAGCA GCCAAGACCA ATGAGCCGGT AGAGCAAGGC
TTGGTCAGTA TGACGGGCAC ATTTTTTGAT ACCATCATCA TCTGTACCAT GACCGGACTG
GTGTTGATCA TCACCGGAGT GTGGAGTGGT GAAACTGCAG GCGCGGCCAT GACCAGTGCC
GCATTTGCCA GTGGTGGTTC GGCATTGGTC GGCCAGTACT TAGTGACGGT CGCTCTGGTC
TGTTTTGCCT TTACCACGAT TTTAGGTTGG CACTATTACG GTGAGCGTTG TTGGTACTAC
CTGATGGGAG ACAGGGGCCT ACGGCTTTAT CAGGGATTGT TTCTGGGTCT GATTGCTGTC
GGGGCTTTCA TTCAACTGGA TATGATCTGG TTGCTTGCCG ATACCGTTAA CGGCCTGATG
GCGATTCCAA ACCTTATAGC GATTATAGGC CTGCGACATG TTATCCATGC CGAAACCCTA
CGTTATTTCT CTAAACGTGA AAGCAGTGAA ATGGACAGAG CCGAGGTTGT GACGGGCTAA
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| Protein sequence | MNFQLLIADL LANVNAIVWG PITLCLLVGT GLYLTVRLKL IQVFRLPLAL KLLFKPATGK
GDLSSFAALC TALSATIGTG NIVGVATAIK IGGPGALFWM WLAAFFGMAT KYAECMLAVK
YRTTDARGRI AGGPMYYIER GLGLGWMAKL FAVFGVGVAF FGIGTFAQVN AISDAMSIAF
HVPTWVTALV LTVLVAAVTL GGVKRIANVA QRLVPTMALG YVLACVWILI AFSDQILPAF
GLIIESAFTP ISAAGGFLGA TVAQALQIGI ARGVFSNEAG LGSAPIAAAA AKTNEPVEQG
LVSMTGTFFD TIIICTMTGL VLIITGVWSG ETAGAAMTSA AFASGGSALV GQYLVTVALV
CFAFTTILGW HYYGERCWYY LMGDRGLRLY QGLFLGLIAV GAFIQLDMIW LLADTVNGLM
AIPNLIAIIG LRHVIHAETL RYFSKRESSE MDRAEVVTG
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