| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3875 |
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| Symbol | |
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| ID | 5611516 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4727694 |
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| End bp | 4728368 |
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| Gene Length | 675 bp |
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| Protein Length | 224 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640934829 |
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| Product | two component transcriptional regulator |
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| Protein accession | YP_001475607 |
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| Protein GI | 157377007 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000754116 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAACTAC TGCTCGTTGA AGATAATGCG CTACTCGTTG AAGAACTCGA AAAACAACTC
AAGCAAGCCG GTTACGTTAC TGATGTGACA GATAAGGCAG CCGAAGCCGA TTACCTGCTA
AAAGAGACAA ATTACGATTG CGTGATCTTA GATATTGGCC TGCCCGATGG TAATGGTCTC
GAACTACTCG AACGCTGGCG AAACCAAGGA ATTAATACAC CGGTCATCAT GTTAACGGCG
CGAAGTCAGT GGCATGAAAA GGTCGAAGGC TTTAATGCCG GTGCCGATGA TTACTTAGGT
AAACCTTTTC ATACTCAAGA ACTGCTGGCA AGAATACATG CACTCATTCA GCGTGCTCAC
GGCAAAGCAA GCTTGCCATC GAAGGAGCTG AGTTTCTCAG GAGTTACACT CGACGAAAAC
CAACAATCAG TGATGGTTGG ATCGAATTTA TTTGAGCTCA CGGCGATGGA GTTCAGGTTA
CTCAAGATTT TTCTGATGTC ACCACAGAAA CTGCTCTCAA AATCTCAACT CACAGATAAG
CTGTATCAAT TCGATGATGA AAAAGAGAGT AATGTCGTAG AGGTCTATGT CACCCATCTA
CGTAAGAAGC TAGGTAAAAC AGCCATTGAG ACACGACGTG GACAAGGTTA TATCTTCCAC
GGCATCAGAG AATGA
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| Protein sequence | MKLLLVEDNA LLVEELEKQL KQAGYVTDVT DKAAEADYLL KETNYDCVIL DIGLPDGNGL
ELLERWRNQG INTPVIMLTA RSQWHEKVEG FNAGADDYLG KPFHTQELLA RIHALIQRAH
GKASLPSKEL SFSGVTLDEN QQSVMVGSNL FELTAMEFRL LKIFLMSPQK LLSKSQLTDK
LYQFDDEKES NVVEVYVTHL RKKLGKTAIE TRRGQGYIFH GIRE
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