| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3872 |
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| Symbol | |
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| ID | 5611601 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4725366 |
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| End bp | 4726142 |
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| Gene Length | 777 bp |
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| Protein Length | 258 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640934826 |
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| Product | Sel1 domain-containing protein |
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| Protein accession | YP_001475604 |
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| Protein GI | 157377004 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0790] FOG: TPR repeat, SEL1 subfamily |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000147421 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAAATATC ATCCGTTATT TGTAGGCGTT GGTTTTGTCA TATTACTCTT GACGAGTACT
ACAACTAATG CATTTTCAAT TCCTCAGCCA GTGGCAGAAG TCGCAGCGAG TAAATTAGCC
CATATTCAGC TGAAAGCCTC TCAAGGCGAG AAAGAAGCAC AGTTTCTTCT CGGCCTCATG
TATCTGTCCG GACGTTTCGT AGAGCAAGAT CAAGAACAGG GGATTAAATG GGTCTCACTG
GCAGCAGAGC AGGGTCATCC TAAGGCTCAA CAGACGCTGG CCGATCTCTC ATTCGAAGGC
AATATTATTG AACGTGACCT GACGGTTGCA GAGCGCTGGT ATCTCTCTTT AAGCGAACAG
GGCAATAAGT GGGCTCAATT CAGGCTCGGT TTTATCTATG CCGCCGGTGG GAATGGTGTG
GAACGGAACT GTGGTAAAGC AGTTGACCGA TTCAGTTCGG TCGGCGATGA AGTTTCATTG
GGGAATGTTG CCTGGATCTT ATCTACCTGT CCGGAAGAGG AATACCGAAA TGGTGATAAA
GCCCTGCAGT TAGCACAGAG CCTGGTTGAT TCGAATCGTG ATGATCCGAC TAACCTTGAT
AATCTGGCTG CGGCCTATGC TGAAACCGGT GACTACAGTG CGGCGATTAT GACGCAGCTA
AAAGCCATCG ATGCTCTGAA GCATAGCGAA GAGGCACATC GTTCGGGGGA GTTTGAGGAG
CGTCTTCAGA CCTATGAGCA GAATAAGCCT TTCCGCGAAA TCGTTCCCTT GATGTAA
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| Protein sequence | MKYHPLFVGV GFVILLLTST TTNAFSIPQP VAEVAASKLA HIQLKASQGE KEAQFLLGLM
YLSGRFVEQD QEQGIKWVSL AAEQGHPKAQ QTLADLSFEG NIIERDLTVA ERWYLSLSEQ
GNKWAQFRLG FIYAAGGNGV ERNCGKAVDR FSSVGDEVSL GNVAWILSTC PEEEYRNGDK
ALQLAQSLVD SNRDDPTNLD NLAAAYAETG DYSAAIMTQL KAIDALKHSE EAHRSGEFEE
RLQTYEQNKP FREIVPLM
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