| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3870 |
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| Symbol | |
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| ID | 5611599 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4723168 |
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| End bp | 4724514 |
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| Gene Length | 1347 bp |
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| Protein Length | 448 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640934824 |
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| Product | Co/Zn/Cd efflux system component |
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| Protein accession | YP_001475602 |
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| Protein GI | 157377002 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAGAGAT ATCAAGAGAT CACACTCGTG GCCTGCCAAC GTGCGCTGGT CACCGTGAGT
CTGTGCGTGC TTGCATTATA TGCAGGCAAG AGTGTTGCCC AGTCAGACCA AGGCAAGGTT
AATCTGCCTT GGGTACTGGA AAAAACCTTG CTCAACAATG TTCAACTACA AAGCTTTCCC
TATGAACTCA GGGTCAGTGA AGCCCTGACC ATACAAGCTG GGATCTCGCC TAATCCTGAG
TTTTCTGTCG AAGTTGAAAA TGTGCTGGGC ACAGGTGAGA GACAAGGCGT CGATAATGCC
GAGATCACTC TGGCATTAAG CCAACTTATC GAGCTGGGTG GTAAACGTCA GCGCCGCGTC
GATGTGGCTC AAGCCACAGA GCGTCAAAAG CTAAGTGAAT ATGAGATATT GCGTCTGGAT
ATCCTGGCCG AGGCCACAGG GCGTTATTAT CAACTACTGC GCCTGCAAGC CCTGCAAGAC
TGGAGCGAAA GACGTTTTTT GGTTGAGCAG ACCGCTTTGA AGGCGATAGA GTCTCGCGCC
AATGCCGGGG CGGTGATTCA AGCCGATGTG ACTAAGATGG CCCTGCGTCT GTCTCGAACG
AAGGCGGTCA AGGAGCAGCT CGATGGCGAG ACAAGGCTTG CCCGACTGCG CTTAGCGGCC
ATGTGGTCGA GGGAACCTCA CTTCACCCGT GCCCTTGGTA CTCTGGACCT GTCATTGACG
CTCCCCACAG CGGCGAGCGT GCTCAACGCT ATCGAAACCG CTCCTCAATA TCTGCAGCTG
TTAAGCGTCG AGCGTTTGAT GTACGCCAAG CGCCGTATGG AGGAATCTAA GGCGCAATAT
GATGTGACAT TGGGGATGGG AGTTCGAAGT TATGAGGGGT TCGATGACGG TGCCTTGATG
TTCAACTTCT CTATGCCCAT TCCTCTCTCT AATCCCAACC AAGGCAATAT ATTGGCCGCT
AAAGCCAATG AAGACAGGGC GATGGAGCAG CAAAAATTGG TCCGCGGTCA ACTAAGGCTT
TCATTGATGG AGATTCATCA GGTCATGGTC AATAACGCCC GGCAAGCAAG CCGTATCCAA
CAGCAAGTTT TGCCTCTGGC ACAACGGTTA CTCGAAGACA CCCAAGGTGC CTATCAAACG
GGGCAAACCA ATGTACTGCA GCTGGTCGAT GCCCAATCTG AGCTGTTTGC CATAGAGCGG
GAGCTTATCG AAGTCAAAGT GGCTGTCTAT CAACAGAGGC TAGAACTCGA GCGCATTACC
GGACAATCAA TGACTGCCAC TGACTCAAAC TTTAGCTCAA ATGCACGTTC AAACATGACG
CCGTTTGTGG CACAGGAGAA CAGATAA
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| Protein sequence | MKRYQEITLV ACQRALVTVS LCVLALYAGK SVAQSDQGKV NLPWVLEKTL LNNVQLQSFP
YELRVSEALT IQAGISPNPE FSVEVENVLG TGERQGVDNA EITLALSQLI ELGGKRQRRV
DVAQATERQK LSEYEILRLD ILAEATGRYY QLLRLQALQD WSERRFLVEQ TALKAIESRA
NAGAVIQADV TKMALRLSRT KAVKEQLDGE TRLARLRLAA MWSREPHFTR ALGTLDLSLT
LPTAASVLNA IETAPQYLQL LSVERLMYAK RRMEESKAQY DVTLGMGVRS YEGFDDGALM
FNFSMPIPLS NPNQGNILAA KANEDRAMEQ QKLVRGQLRL SLMEIHQVMV NNARQASRIQ
QQVLPLAQRL LEDTQGAYQT GQTNVLQLVD AQSELFAIER ELIEVKVAVY QQRLELERIT
GQSMTATDSN FSSNARSNMT PFVAQENR
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