| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3853 |
|---|
| Symbol | |
|---|
| ID | 5611657 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 4700624 |
|---|
| End bp | 4701319 |
|---|
| Gene Length | 696 bp |
|---|
| Protein Length | 231 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640934807 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001475585 |
|---|
| Protein GI | 157376985 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.182683 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATCTT GTCGAATCGC ACTGAGTTTG GCTGTGAGTC TATTTGTACT GCTATTAAGC
GGCTGTGGTG TCGTTCAGGA TTATCGTCAA TCACAGATGT TTAAAAGCTT CGATGACTTC
AGGCCGGGGC CGGAAGGTGG CAGCGACCTT ATCTGGGCAA AACCGGGTAT TAAGAGCATC
AAAGATCTTA ATGAAATTCT CGGGCAATAC GATAGCGTTA TCGTCGATCA GGTCTGGTTA
GTTCTGGATG ATAAGACCCG CTACGATAAT CTATCTGAAG AGGAGGTTAT CGGCGTGTCT
GAGTATCTGG TCGAAAAGAT AAAACAGAAG GCCGCGACTC GTTTTGAGCT AGTAGATAAC
CCGAAGGGGA AGACCTTAAG GATTAGTGTC GCCCTGACCA ACATAGAAAC GCCTAACCCT
ATCTTGGCGG TCACCAGTAG TCTGCTTCCC TTTGGGCTCG GGATCTCCAC TATCTCTAAA
GTTGTGACCG GAGAGCACAC CAATGTCGGT AGCGCCACGA TTGAGATGAT GATCAGCGAT
GCTAACTCAG GTAAGCCTAT CGTCGCGGTT ATCGACAGAA AAGCGGGTAG TAAGGATCTG
AGCACCATGA TTGATTCGAC AGATGATGCC AGAGATGCCA TTGACTGGTG GGTCGAGAGA
ATCGGTTCGA CGCTACGGGG AGAGCTGCCT CAGTAA
|
|---|
| Protein sequence | MKSCRIALSL AVSLFVLLLS GCGVVQDYRQ SQMFKSFDDF RPGPEGGSDL IWAKPGIKSI
KDLNEILGQY DSVIVDQVWL VLDDKTRYDN LSEEEVIGVS EYLVEKIKQK AATRFELVDN
PKGKTLRISV ALTNIETPNP ILAVTSSLLP FGLGISTISK VVTGEHTNVG SATIEMMISD
ANSGKPIVAV IDRKAGSKDL STMIDSTDDA RDAIDWWVER IGSTLRGELP Q
|
|---|
| |