Gene Ssed_3849 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3849 
Symbol 
ID5611692 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp4693269 
End bp4695098 
Gene Length1830 bp 
Protein Length609 aa 
Translation table11 
GC content53% 
IMG OID640934803 
Productcysteine/glutathione ABC transporter membrane/ATP-binding component 
Protein accessionYP_001475581 
Protein GI157376981 
COG category[O] Posttranslational modification, protein turnover, chaperones
[C] Energy production and conversion 
COG ID[COG4988] ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components 
TIGRFAM ID[TIGR02857] thiol reductant ABC exporter, CydD subunit 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000408655 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGACAAAC CCTTAGAAAA AGTACTCACC TCCTGGTTGA AACAACAGAA ACAAGCCTGT 
GGTTTCTATC TGAATTTGAC CGTATTATTT GGTCTGTTGA CCGGTTTATC ATTAGTGGCG
CAGGCCTACC TGATTGCCAC TATTTTACAT GGGCTGATCA TTCTGGAGCT GCCCAAGGAG
CAGTTTGCTA CCCAATTCTA TTGTCTGGTG GGACTCATCT TTATCCGGGC GGGGTTGGCC
TATGGACGAG AGAGAGTCAG TTTCGAGGCG GGAAGGCGGC TTAGGGTGCA GATCCGTGGC
GCGGTTTTAG ATAAATTGAC CGAGCTTGGC CCCTGCTTCA TTAAAGGCAA ACCAGCGGGG
AGTTGGGCAA GTATCGTGTT AGAGCAGGTG GAAGATCTGC ATGATTTCTA TGCCCGTTAT
CTGCCGCAGA TCATCTTGGC GGCCTTTATA CCGCTCACCA TACTCGTGGT CGTGTTTCCG
ATTAATTGGG CCGCCGGACT GATCCTCTTG CTGACGGCGC CGCTGATCCC CATGTTTATG
GCACTGGTCG GCATGGGCGC CGCCGATGCC AACCGAAAGA ATTTCAGCGC CCTGGCTAAG
CTCAGTGGCC ACTTCATGGA CAGAATGAAG GGATTAAATA CCATCAAGTT GTTTAATCGC
GGCGACGCAG AGAGTGAGGC TATCGAATCG GCATCCGAGG AGTTCCGAGA GCGGACCATG
TCGGTACTCA GGCTGGCATT CTTAAGCTCT GCCGTGCTGG AGTTTTTTGC GGCAGTATCC
ATTGCCGTAC TCGCCGTTTA CTTTGGTTTC AGCTATCTGG ACCATCTGAA TTTCGGCCAT
TATGGCGCGG GTCTCACCCT GTTTACCGGT CTGTTTGTGC TGATCCTCGC CCCCGAATTT
TATCAACCGC TTCGAGATAT GGGGACCCAT TACCATGCAA AGGCGCAGGC GATAGGTGCC
GCCGAAGAGT TGATGGCGCT GTTAAATCAT AAAGTTGAGT CCGGCACTGA ATCGGCAAGC
GATCCACTGC TTGTTAAGGG GAAGGCTGAC CCTCTTATTA CTGAGAGCTT CAGGGCTGGA
ATATCGATTC AGGCAAGTGC CCTGTGCGTC GACAGTCCCG ACGGTACTCA GTTACTGGGG
CCGGTGGATT TCAATATAAG CGCGGGTGAG CATATGGCTG TCGTGGGGCC AAGCGGCGCC
GGTAAAACCA GTCTGCTCAA TGCATTGCTG GGATTCCTTC CCTATCGCGG AAGCCTTAAG
GTTAATGGAG TCGAGCTTAA TGCACTCAAT AAATCCCAAT GGCGTCGCCA CTTAGCCTGG
TTGGGGCAAG ATCCTCAGCT GTTTCATGGC ACCATTCGTG ACAATGTCTC CATGAGCAAG
CCCGATATGG GTGATGAGAC CGTGATGGCC TTGCTTGAGA AGGCGAAGGT CTTGAACTTC
GTTGAACGTC AAACCCATGG GCTGAATCAC CCGATAGGCG AACAGGCATC GGGCGTCTCG
GTGGGACAGG CGCAGCGTAT CGCTCTTGCC CGGGCCCTGG GCCAGGATGC TTCCCTGTTT
GTTCTCGATG AACCGACGGC GAGTCTGGAT AATCACAGTG AGCAAGCGGT ACAGACGGCG
CTTAGAGAGG CGATGTCGGG GAAAGCTTGC CTGATGGTGA CTCACAGGCT GGATCAGCTG
CACACGATGG ATACCATCTT AGTGCTGGAT AGGGGACTTG TGGTACAGCG AGGGAGTTTC
GATGAGTTAG ACCAGAATCA GGGTCTGTTT AAGCAGATGC AGGAAGAGAG CAATGATGAG
TTTACTAACC TGAAGGGGCT TAACCGATGA
 
Protein sequence
MDKPLEKVLT SWLKQQKQAC GFYLNLTVLF GLLTGLSLVA QAYLIATILH GLIILELPKE 
QFATQFYCLV GLIFIRAGLA YGRERVSFEA GRRLRVQIRG AVLDKLTELG PCFIKGKPAG
SWASIVLEQV EDLHDFYARY LPQIILAAFI PLTILVVVFP INWAAGLILL LTAPLIPMFM
ALVGMGAADA NRKNFSALAK LSGHFMDRMK GLNTIKLFNR GDAESEAIES ASEEFRERTM
SVLRLAFLSS AVLEFFAAVS IAVLAVYFGF SYLDHLNFGH YGAGLTLFTG LFVLILAPEF
YQPLRDMGTH YHAKAQAIGA AEELMALLNH KVESGTESAS DPLLVKGKAD PLITESFRAG
ISIQASALCV DSPDGTQLLG PVDFNISAGE HMAVVGPSGA GKTSLLNALL GFLPYRGSLK
VNGVELNALN KSQWRRHLAW LGQDPQLFHG TIRDNVSMSK PDMGDETVMA LLEKAKVLNF
VERQTHGLNH PIGEQASGVS VGQAQRIALA RALGQDASLF VLDEPTASLD NHSEQAVQTA
LREAMSGKAC LMVTHRLDQL HTMDTILVLD RGLVVQRGSF DELDQNQGLF KQMQEESNDE
FTNLKGLNR