| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3829 |
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| Symbol | |
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| ID | 5613013 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4669032 |
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| End bp | 4669823 |
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| Gene Length | 792 bp |
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| Protein Length | 263 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640934783 |
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| Product | putative ABC transport system permease protein |
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| Protein accession | YP_001475561 |
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| Protein GI | 157376961 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0390] ABC-type uncharacterized transport system, permease component |
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| TIGRFAM ID | [TIGR00245] conserved hypothetical protein TIGR00245 |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.000000396404 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGGATCGA CCATAGATAT CAGTTGGGGG CAATTAGCCC TATTTATGTC AGTACTGTTT
ATTCCCCTGC TCATCAATCG AAGGTTTGAA CTCAGATTAG GCCGTGATAT CTCCATTGCG
GTGATACGAA TGACGGTGCA ATTAATCCTG GTTGGCTTAT ACCTGGAGTT TCTGTTTGAG
CTCAACAGTC CACTGTTAAA TATACTCTGG TTAAGCGTCA TGATACTCAT AGGAGCGAGT
GCGATCATCG GCGGCGTTAA GCTCCCCAAG CGCGTCTTGT ATCTTCCCGT TTTTACCGGG
TTAATTATCG CCATAACACC GCTTATGCTT ATTCTCCTGG CCCTCTTATT AAAACCGCAG
CCCATCTTCA GCGCGCAATA CACTATCCCA CTCGCCGGCA TGCTACTGGG TAATAGTCTC
AGTGGGAATA TTGTTGCCTT GCAAAGGCTA TTTTCTGCCT TTGAGGAAAA ACGAATGGAG
TATGAAGGGG TCTTGGCCCT GGGGGGAAAA CCGAATCAGG CGGCCTACCC TTTCGTTCAA
TCGGCCTTGA AGCAATCTTT AGCCCCTATT CTGGCCTCTA TGACTACTAC GGGGCTCGTT
ACACTACCGG GTATGATGAC GGGTCAGATT TTGGGAGGCA GCGATCCTAT GGTCGCTATC
AAGTATCAGT TAGTCATACT GGTTGCGATA TTTGTCATGT TAAGTGTGTC TGTGACTATT
TCATTAGTCC TGTCGGTAAG AAGCAGTATT GAACCCACAG GTTTTATCAA AATCCGTATT
AACAAGCCAT AA
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| Protein sequence | MGSTIDISWG QLALFMSVLF IPLLINRRFE LRLGRDISIA VIRMTVQLIL VGLYLEFLFE
LNSPLLNILW LSVMILIGAS AIIGGVKLPK RVLYLPVFTG LIIAITPLML ILLALLLKPQ
PIFSAQYTIP LAGMLLGNSL SGNIVALQRL FSAFEEKRME YEGVLALGGK PNQAAYPFVQ
SALKQSLAPI LASMTTTGLV TLPGMMTGQI LGGSDPMVAI KYQLVILVAI FVMLSVSVTI
SLVLSVRSSI EPTGFIKIRI NKP
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