| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3816 |
|---|
| Symbol | |
|---|
| ID | 5613396 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 4648937 |
|---|
| End bp | 4649851 |
|---|
| Gene Length | 915 bp |
|---|
| Protein Length | 304 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640934770 |
|---|
| Product | ApbE family lipoprotein |
|---|
| Protein accession | YP_001475548 |
|---|
| Protein GI | 157376948 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1477] Membrane-associated lipoprotein involved in thiamine biosynthesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.00039468 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAATATTC AAGAGAATAG GGAATCACCC GATTTTGAGT TGAGCCATCG TAGCTGGGGA
CATTTAGGTT CGTTTCGTGC GATGGCGAGC CCCTGTGAGT TACTCATCGC CACTGAAGAT
GAACACTTGG CCCGTGAGAT GATGAGTATT GCGGCCTTTG AAGCTATGCG CATCGAGCAA
AAATTCAGCC GCTTCATCGA GGGAAATCCC CTGTGGAAGA TTAATCATGC AGCGGGAACC
CTCTCTCTAA TTGACGCAGA AATTGCGAGT CTGCTGCAGT TTGCCCGCCA GTGTCATCAG
CTCAGTGATG GTCGATTCGA TATCAGCGCT GGCCCTTTAA TGAAACTATG GCGATTCGAT
GGTGGTGAGC TCCCCGAAGC GGCCGATATC GAGCAGGCCA GGGCATTAGT CGATTTTTCC
AGGGTGGACT TTAACGAACG TCACCTGCAG TTTCCCTCCG GCATGTCCCT CGATTTTGGC
GGTATCGCGA AAGAGTACGC CGTCGATAGA GTGGCTTATC TGCTTGCTGA AAAGTGGCCG
ACTATTTCGG TGCTGGTTAA CTTCGGCGGT GATATCGCCT GCCCGGTATC TAAAGGGGCG
GATAATGAAC CCTGGCAAGT GGGCATCGAA AATCCGCAGC GACTCGACAG CGCCGGGGCA
CGGTTAGAGA TCCGTAAGGG GGCGCTGGCA ACCAGCGGCG ATACCCGGCG ATTTATCGAA
AAGGATGGTC AACGCTTCGG TCATATCATC GACCCCGGAA CCGGCTACCC CGTAGTCAAG
GCGCCACGTT CGGTCACTGT ACTCGGACCC AACTGCGTCA CTGCCGGCAT GCTGGCCACC
ATGGCCATGC TTGAAGGCGA AAAAGCCGAA ACCTTCCTCA GCGAACAAGA AGTAGAGTTT
AAGTGTTTTA GATAG
|
|---|
| Protein sequence | MNIQENRESP DFELSHRSWG HLGSFRAMAS PCELLIATED EHLAREMMSI AAFEAMRIEQ
KFSRFIEGNP LWKINHAAGT LSLIDAEIAS LLQFARQCHQ LSDGRFDISA GPLMKLWRFD
GGELPEAADI EQARALVDFS RVDFNERHLQ FPSGMSLDFG GIAKEYAVDR VAYLLAEKWP
TISVLVNFGG DIACPVSKGA DNEPWQVGIE NPQRLDSAGA RLEIRKGALA TSGDTRRFIE
KDGQRFGHII DPGTGYPVVK APRSVTVLGP NCVTAGMLAT MAMLEGEKAE TFLSEQEVEF
KCFR
|
|---|
| |