| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3814 |
|---|
| Symbol | |
|---|
| ID | 5613327 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 4648375 |
|---|
| End bp | 4648629 |
|---|
| Gene Length | 255 bp |
|---|
| Protein Length | 84 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640934768 |
|---|
| Product | putative YefM protein |
|---|
| Protein accession | YP_001475546 |
|---|
| Protein GI | 157376946 |
|---|
| COG category | [D] Cell cycle control, cell division, chromosome partitioning |
|---|
| COG ID | [COG2161] Antitoxin of toxin-antitoxin stability system |
|---|
| TIGRFAM ID | [TIGR01552] prevent-host-death family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.000265887 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGAATCA TATCTTTTAC AGAAGCACGA AATGGCTTGA AAGCAGTATT GGACGGTGTG
GTTAATGATG CTGACACGAC TGTAATTACA CGCAGAGATT CTGAAGATGC AGTTGTTATG
TCACTGGACT ACTACAACAG TCTAATGGAA ACGGTGCACT TGCTTCGCTC TCCGGCAAAC
GCAGAGCATC TGAATCGTTC AATTGCTCAA TATAGATCGG GAAAAGTAAC TCAAAGAGAG
TTAATTGATG AGTAG
|
|---|
| Protein sequence | MRIISFTEAR NGLKAVLDGV VNDADTTVIT RRDSEDAVVM SLDYYNSLME TVHLLRSPAN
AEHLNRSIAQ YRSGKVTQRE LIDE
|
|---|
| |