| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3812 |
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| Symbol | |
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| ID | 5613603 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4645486 |
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| End bp | 4646916 |
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| Gene Length | 1431 bp |
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| Protein Length | 476 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640934766 |
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| Product | bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase |
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| Protein accession | YP_001475544 |
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| Protein GI | 157376944 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2870] ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase |
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| TIGRFAM ID | [TIGR00125] cytidyltransferase-related domain
[TIGR02198] rfaE bifunctional protein, domain I
[TIGR02199] rfaE bifunctional protein, domain II |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.000431909 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGGTGT CTCTACCAGC GTTTGAAAAG GCAAAGGTGT TAGTTGTCGG TGATGTGATG
TTAGACCGTT ACTGGACTGG CCCTACCGGC CGCATTTCGC CTGAAGCACC TGTGCCAGTG
GTGAAGATCT CACAGATTGA GGACAGACCT GGTGGGGCGG CCAACGTAGC GCTCAACGTG
GCAACTCTAG GTGGCCAGGT GAGTCTGGCT GGTATCGTTG GTAAAGATGA GGCCGCAGAT
GCACTCACTA CAGGGATTCA AGCCTTGGGC GTCGAGCCTA AATGGCATTG TGTGGAGGGT
AAGCCCACCA TCACAAAGCT AAGAGTCATG TCAAGAAATC AGCAACTTAT CCGTCTCGAC
TTTGAAGAGG CCTATCCTGA GGATGAGAGT AAGGCATTAC TGACTCTGTC TGAATCTGCA
CTGGACAATG TTGCTGTTGT TGTGCTGTCA GATTATGCGA AGGGAGCGAT AACTCAGCCT
CAGGAGTTTA TTCAGAAGGC TATAGCCAAA GGTGTTAAGG TGCTGGTAGA CCCTAAGGGG
AGTGATTTTT CCCGTTATCG TGGTGCGTCG TTAATTACTC CCAATATGGG TGAGTTTGAA
GAGGTTGTCG GTAGCGTCTC TTCAGAAGCC GAGTTGGTTG AGAAGGCACA AGCCCTGCTT
AGTGAATTCG ATATCGAGGC TATCTTAGTG ACTCGTTCAG AAAAAGGGAT GACCTTAATT
ACCGCCGATG CTCCCGAGCT GCATATTCCT ACCGTGGCAC GTGAAGTCTA TGATGTGACT
GGTGCCGGTG ATACCGTTAT CTCCGCACTT GCAACCTCAT TAGCCGCAGG AAGCGATCTT
CCTCAAGCCT GTGCCATCGC TAACACCGCG GCCGGTATCG TCGTTGCTAA ACTGGGTACC
TCGACGGTAA GCAGAATTGA GTTGATTAGG GCGCTGTCGG TTAATCACGG CGAGTCTGGT
TTTGGCGCTG TCAGTGAAGA TCAGCTGGCA TATGCTCTGG AGCAAGCGAG ACTTCGCGGC
GAACGAGTTG TGATGACCAA TGGCTGTTTC GATATCTTAC ATGCGGGGCA TGTGAGTTAC
CTGAAACAAG CCAGAGAGTT AGGTGACAGA TTGATTGTCG CCGTTAATGA TGACGATTCC
GTTAAACGCC TGAAGGGTGA AGGGCGTCCG GTCAATCAGT CTGATCGTCG TATGGCCGTT
TTAGCGGGTT TGGCCTCGGT TGATTGGGTG GTGCCATTCA CCGAAGACAC TCCGCAGCGT
ATTATTTCCA GACTATTACC GGATCTGCTG GTGAAAGGCG GAGATTATAA GATTGAAGAT
ATAGCGGGTG GTAAAGAGGT GATTGCCGCC GGTGGCTCCG TGAAAGTCCT GGGCTTTGAG
GATGGCGTTT CGACGACATC GATTATCGAA AATATCATGG CTAATCAGTG A
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| Protein sequence | MKVSLPAFEK AKVLVVGDVM LDRYWTGPTG RISPEAPVPV VKISQIEDRP GGAANVALNV
ATLGGQVSLA GIVGKDEAAD ALTTGIQALG VEPKWHCVEG KPTITKLRVM SRNQQLIRLD
FEEAYPEDES KALLTLSESA LDNVAVVVLS DYAKGAITQP QEFIQKAIAK GVKVLVDPKG
SDFSRYRGAS LITPNMGEFE EVVGSVSSEA ELVEKAQALL SEFDIEAILV TRSEKGMTLI
TADAPELHIP TVAREVYDVT GAGDTVISAL ATSLAAGSDL PQACAIANTA AGIVVAKLGT
STVSRIELIR ALSVNHGESG FGAVSEDQLA YALEQARLRG ERVVMTNGCF DILHAGHVSY
LKQARELGDR LIVAVNDDDS VKRLKGEGRP VNQSDRRMAV LAGLASVDWV VPFTEDTPQR
IISRLLPDLL VKGGDYKIED IAGGKEVIAA GGSVKVLGFE DGVSTTSIIE NIMANQ
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