Gene Ssed_3801 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3801 
Symbol 
ID5612039 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp4632181 
End bp4632708 
Gene Length528 bp 
Protein Length175 aa 
Translation table11 
GC content45% 
IMG OID640934755 
Productredoxin domain-containing protein 
Protein accessionYP_001475533 
Protein GI157376933 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG1225] Peroxiredoxin 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.659917 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.636484 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTAAAC TGACTAAAAT ACTTATCGTG TCTTTAATAC TGACTTGCTC GGCCTATGTG 
CAGGCAAGCG ATCTCAAGGT CGGAGACAAG GCGCCGGACT TTAAATTACA GTCCACCAAC
GGTGAATTCT ATCAACTCAA GGATTATTTG GGGAAGCAGA CATTAGTCCT GGCCTGGTAC
CCTATGGCCA ATACCCGCGG ATGCACCCTC GAGTGCCGCT CTCTGGTTCA AAAGGGGCAT
TTAATCCGTG AGTACAATGC GGCTTATATG ATGGCAAGCG TCGACGACTT AGAAGATAAC
CAGGACTTTG CTAAGAAACA GAAAGCAGAC TTTCCTATGT TAAGCGATCC GACCAAAGAG
ACCGCTAAAG CCTATGATGT GCTCAACTTT GTTCGCGTAG CCAGCAGAGT GACATTTTAT
ATCGGTGAAG ATGGGACAAT ATTAAAAATT GATGAAGATA TTAACGCCGA AACGGCAGCG
GAAGATATTG CAGCAACGCT GAAACAGTTG GGAATAGAGA AACAGTAA
 
Protein sequence
MIKLTKILIV SLILTCSAYV QASDLKVGDK APDFKLQSTN GEFYQLKDYL GKQTLVLAWY 
PMANTRGCTL ECRSLVQKGH LIREYNAAYM MASVDDLEDN QDFAKKQKAD FPMLSDPTKE
TAKAYDVLNF VRVASRVTFY IGEDGTILKI DEDINAETAA EDIAATLKQL GIEKQ