Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3801 |
Symbol | |
ID | 5612039 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 4632181 |
End bp | 4632708 |
Gene Length | 528 bp |
Protein Length | 175 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640934755 |
Product | redoxin domain-containing protein |
Protein accession | YP_001475533 |
Protein GI | 157376933 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG1225] Peroxiredoxin |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.659917 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.636484 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTAAAC TGACTAAAAT ACTTATCGTG TCTTTAATAC TGACTTGCTC GGCCTATGTG CAGGCAAGCG ATCTCAAGGT CGGAGACAAG GCGCCGGACT TTAAATTACA GTCCACCAAC GGTGAATTCT ATCAACTCAA GGATTATTTG GGGAAGCAGA CATTAGTCCT GGCCTGGTAC CCTATGGCCA ATACCCGCGG ATGCACCCTC GAGTGCCGCT CTCTGGTTCA AAAGGGGCAT TTAATCCGTG AGTACAATGC GGCTTATATG ATGGCAAGCG TCGACGACTT AGAAGATAAC CAGGACTTTG CTAAGAAACA GAAAGCAGAC TTTCCTATGT TAAGCGATCC GACCAAAGAG ACCGCTAAAG CCTATGATGT GCTCAACTTT GTTCGCGTAG CCAGCAGAGT GACATTTTAT ATCGGTGAAG ATGGGACAAT ATTAAAAATT GATGAAGATA TTAACGCCGA AACGGCAGCG GAAGATATTG CAGCAACGCT GAAACAGTTG GGAATAGAGA AACAGTAA
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Protein sequence | MIKLTKILIV SLILTCSAYV QASDLKVGDK APDFKLQSTN GEFYQLKDYL GKQTLVLAWY PMANTRGCTL ECRSLVQKGH LIREYNAAYM MASVDDLEDN QDFAKKQKAD FPMLSDPTKE TAKAYDVLNF VRVASRVTFY IGEDGTILKI DEDINAETAA EDIAATLKQL GIEKQ
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