Gene Ssed_3793 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3793 
Symbol 
ID5612074 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp4622732 
End bp4624129 
Gene Length1398 bp 
Protein Length465 aa 
Translation table11 
GC content51% 
IMG OID640934747 
Producthypothetical protein 
Protein accessionYP_001475525 
Protein GI157376925 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000178587 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAATCTA AGTTAACTTT GCTGGCTCTA TCTATCACAA CGCTAAGTCT TGCTGGCCTG 
AGTAGTACAC AGGTTTTGGC AGCCGAGCCT GAACAGCTCC AACAGGCGAT CGCGAAGCAG
GAGGCTGAGC TTAACAAGCT CAAGCGAGAT TTGGCAGAAC TTGCCTCGCA GCAAAAACTG
CAGCAGCAAG AGCAGCAGAA GCAGGCCCAA GTGGTCACAG CTGCCAAGCA GGAGCTTGCT
GATAGTAAAT TCAGCAAGTT TAAGTTCAAG TCATACGGCA GCATGAATTA CACCAGCGCT
GAGTATTTTG AAAATGTGCA AGATACTTCA CCTGAGCGCC GTGGTCGTTT TGACCTTGAG
CGAATTGTGA CTGAATTTGG CTACCAGTTT AACGACGAGT GGGACATGGA AGTCGAGATC
GAATATGAGC ACGGTGGTAC AGGTACCGCC CTGGAATATG ACGGTTTCGA TGAGTTTGGA
GAGTTCGAAT CTGAGGTCGA GGCCGGTGGT GAGGTCATGA TTGAGAAGGC TCAATTGAGG
TACCGTCCCA GCGATGCCTT CGGGGTTAAG TTTGGTAATA TCCACCTGCC AATCGGTCTG
TCGAGCATTC TACATAAACC CGATCAGTAT CTGACCGTGC TGCGTCATCG CAGTGAAGCT
GCCATGTTAC CCGCGGTCTG GAACGAAACC GGTGTCGGTC TGTTTGGTGA AGTAGCGAAT
TTTCACTATC AGGCTCAGGT CGTTAGCGGA CTTAATTCCG AGTACTTCAG AACCTATGAC
TGGGTTGCAT CTGGCCACCA AAAGCGATTC GAGCATGTTA ATGCCGATGA TCTGGCCTAT
GCGTTGCGTC TCGATTACGG AAACTTTAAG AAAGGCTCGG CTGTAGGTGT CGCCTATTAC
TACGGTAATA CCACTGGAAA TCGCCATAAG AGCAACAAGG TATCCGGCGA TGGTACGGTG
AGCATTCTGG CCGTCTCAGG CGCATTCGTT CAAGGTCCCT GGATCTTACG TGGCCAATAT
CTCAATGGCA CACTGAGTGA TGCCGATGCC ATTACCCAAT CAAATAAAAC CACCCCAGGT
CTGAAACCCG GTAACTTCGC TCAATTAGGC TCTAAGTCGG AAGCTTTCTT CGTCGAAGCC
GGCGTCGACC TGGGTCAATT CACCCCAGTA CCAATCACTA TCTTTGCCAA TATCGATTAC
TCAAATCCCT TGGCCGAAGT CGAAACAGGG ACCGCCACCA AGCGATATGA AAATACCTGG
ACCAGTGTCG GGGTTAACTA CTTTCCGATC CCCGAGATTG TGCTCAAGGC CGAGGTCGGT
CGTCAGCAGG TCGCCGTGTC ATCAATACCC GATACCAACT TTTTCGCGCT GGGTGTCGGT
TACCAGTTCT CGCTGTGA
 
Protein sequence
MKSKLTLLAL SITTLSLAGL SSTQVLAAEP EQLQQAIAKQ EAELNKLKRD LAELASQQKL 
QQQEQQKQAQ VVTAAKQELA DSKFSKFKFK SYGSMNYTSA EYFENVQDTS PERRGRFDLE
RIVTEFGYQF NDEWDMEVEI EYEHGGTGTA LEYDGFDEFG EFESEVEAGG EVMIEKAQLR
YRPSDAFGVK FGNIHLPIGL SSILHKPDQY LTVLRHRSEA AMLPAVWNET GVGLFGEVAN
FHYQAQVVSG LNSEYFRTYD WVASGHQKRF EHVNADDLAY ALRLDYGNFK KGSAVGVAYY
YGNTTGNRHK SNKVSGDGTV SILAVSGAFV QGPWILRGQY LNGTLSDADA ITQSNKTTPG
LKPGNFAQLG SKSEAFFVEA GVDLGQFTPV PITIFANIDY SNPLAEVETG TATKRYENTW
TSVGVNYFPI PEIVLKAEVG RQQVAVSSIP DTNFFALGVG YQFSL