Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3793 |
Symbol | |
ID | 5612074 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 4622732 |
End bp | 4624129 |
Gene Length | 1398 bp |
Protein Length | 465 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640934747 |
Product | hypothetical protein |
Protein accession | YP_001475525 |
Protein GI | 157376925 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0000178587 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAATCTA AGTTAACTTT GCTGGCTCTA TCTATCACAA CGCTAAGTCT TGCTGGCCTG AGTAGTACAC AGGTTTTGGC AGCCGAGCCT GAACAGCTCC AACAGGCGAT CGCGAAGCAG GAGGCTGAGC TTAACAAGCT CAAGCGAGAT TTGGCAGAAC TTGCCTCGCA GCAAAAACTG CAGCAGCAAG AGCAGCAGAA GCAGGCCCAA GTGGTCACAG CTGCCAAGCA GGAGCTTGCT GATAGTAAAT TCAGCAAGTT TAAGTTCAAG TCATACGGCA GCATGAATTA CACCAGCGCT GAGTATTTTG AAAATGTGCA AGATACTTCA CCTGAGCGCC GTGGTCGTTT TGACCTTGAG CGAATTGTGA CTGAATTTGG CTACCAGTTT AACGACGAGT GGGACATGGA AGTCGAGATC GAATATGAGC ACGGTGGTAC AGGTACCGCC CTGGAATATG ACGGTTTCGA TGAGTTTGGA GAGTTCGAAT CTGAGGTCGA GGCCGGTGGT GAGGTCATGA TTGAGAAGGC TCAATTGAGG TACCGTCCCA GCGATGCCTT CGGGGTTAAG TTTGGTAATA TCCACCTGCC AATCGGTCTG TCGAGCATTC TACATAAACC CGATCAGTAT CTGACCGTGC TGCGTCATCG CAGTGAAGCT GCCATGTTAC CCGCGGTCTG GAACGAAACC GGTGTCGGTC TGTTTGGTGA AGTAGCGAAT TTTCACTATC AGGCTCAGGT CGTTAGCGGA CTTAATTCCG AGTACTTCAG AACCTATGAC TGGGTTGCAT CTGGCCACCA AAAGCGATTC GAGCATGTTA ATGCCGATGA TCTGGCCTAT GCGTTGCGTC TCGATTACGG AAACTTTAAG AAAGGCTCGG CTGTAGGTGT CGCCTATTAC TACGGTAATA CCACTGGAAA TCGCCATAAG AGCAACAAGG TATCCGGCGA TGGTACGGTG AGCATTCTGG CCGTCTCAGG CGCATTCGTT CAAGGTCCCT GGATCTTACG TGGCCAATAT CTCAATGGCA CACTGAGTGA TGCCGATGCC ATTACCCAAT CAAATAAAAC CACCCCAGGT CTGAAACCCG GTAACTTCGC TCAATTAGGC TCTAAGTCGG AAGCTTTCTT CGTCGAAGCC GGCGTCGACC TGGGTCAATT CACCCCAGTA CCAATCACTA TCTTTGCCAA TATCGATTAC TCAAATCCCT TGGCCGAAGT CGAAACAGGG ACCGCCACCA AGCGATATGA AAATACCTGG ACCAGTGTCG GGGTTAACTA CTTTCCGATC CCCGAGATTG TGCTCAAGGC CGAGGTCGGT CGTCAGCAGG TCGCCGTGTC ATCAATACCC GATACCAACT TTTTCGCGCT GGGTGTCGGT TACCAGTTCT CGCTGTGA
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Protein sequence | MKSKLTLLAL SITTLSLAGL SSTQVLAAEP EQLQQAIAKQ EAELNKLKRD LAELASQQKL QQQEQQKQAQ VVTAAKQELA DSKFSKFKFK SYGSMNYTSA EYFENVQDTS PERRGRFDLE RIVTEFGYQF NDEWDMEVEI EYEHGGTGTA LEYDGFDEFG EFESEVEAGG EVMIEKAQLR YRPSDAFGVK FGNIHLPIGL SSILHKPDQY LTVLRHRSEA AMLPAVWNET GVGLFGEVAN FHYQAQVVSG LNSEYFRTYD WVASGHQKRF EHVNADDLAY ALRLDYGNFK KGSAVGVAYY YGNTTGNRHK SNKVSGDGTV SILAVSGAFV QGPWILRGQY LNGTLSDADA ITQSNKTTPG LKPGNFAQLG SKSEAFFVEA GVDLGQFTPV PITIFANIDY SNPLAEVETG TATKRYENTW TSVGVNYFPI PEIVLKAEVG RQQVAVSSIP DTNFFALGVG YQFSL
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