| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3754 |
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| Symbol | |
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| ID | 5610172 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4573569 |
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| End bp | 4575812 |
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| Gene Length | 2244 bp |
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| Protein Length | 747 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640934708 |
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| Product | peptidase U32 |
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| Protein accession | YP_001475486 |
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| Protein GI | 157376886 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0826] Collagenase and related proteases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 54 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTAGAA AAATTGAATT ATTGGCACCG GGTGGGGATG TCGATGCGAT CAAAGCCGCG
ATTGTTGCCG GTGCAAACGC CGTCTACTGT GGCCTGGATA CATTCAATGC CCGTAACCGG
GCGACTAACC TCTCTTTCGA TGACTTGATG GGGGTCATTG AGCTCGCACA CCAATACCAG
TGTGAAGTCT TCCTCACTAT GAATATCGTG ATCCTGGAGC ACGAGATCAC AGGCTTAGTT
AAGCTGCTCA ATCAAATCGT TAATATCGGC ATCGATGGCA TAATTGTGCA GGATCTGGGG
ATATTTAATC TGGTCAAGAA GCATTTCCCC ACTCTGGCCG TGCACGCATC GACCCAGCTC
ACCACCCATA ACCCTGGGCA AATACGCTTT CTGGCCAAGG TTGGCGCCAC CCGAGCCAAC
CTGTCGCGGG AGTTAAACCT CGGTGAGATT AAGAGTCTCA CCACACTCGC CCATGAGCAT
GATGTGCTTA CCGAGGTCTT TGTCCATGGC GCGCTGTGTA TCGCCTTCTC GGGCCAGTGT
TATTCGAGCT CGGTCAGTGT CGGCAACTCC GGCAACCGTG GTCGATGCAG CCAAGCCTGC
CGCGATGAAT ATGAGATCAC CAATGCGGGC AACAAGTTCC CATTGAACCT GAAAGATAAC
TCGGCCTATT TCGACCTGCC GGAACTGGTC GACGCCGGCG TCGACTCGCT GAAGATCGAG
GGGCGCATCA AAGGCGCGCA ATATGTCCAC ACCGTGGTGG ATAGCTGGCG CCAGCAGATA
GATAAATTTG TCGAAACGGG CCAGTTGTTA TCCGATAACA CCAACCTTTA TAAGGTATTT
AACCGTGATT TCACCAACTC CTTCTTGAAG GGCGATCTCA CCAAGAATAT GTTTATCGAT
AACCCCCGTG ATAACAGCTT TCAGCATGCC AACGATAAAC ATAACGCCAT CTCTGTGGTG
CAGATCCAGG CCGTGCAAAA AGACCTTTCT GAAGAGAAAA ATGCCATCGG CGCGCGTGTG
GTCGAAAAAA TTCAGCACTT AAGCATCGCC AAGCAAGCAT TGACTATCCG CTTTAGCGGA
CAAGCCGGCA AGCCGCTAAC GGTCGATGTC ACCGCTGGCA AGCATGAGTT TTGCGTACAA
TCTGAGATGC CGCTTATCGC ATCCGAGCAA GCGGCGGTCG ATCAAAGCGC CATCGAAAAG
CGCTTCAAGA GCCTGCAACA GGGCAAATAC GCCCTGCAAG CATTCGACTT CAGCGGTCTC
GATACCGGCC TCAACATGCC GTTTAAGGAG CTGACCCGAA TTAAAAAGCA GGTCGCCTTC
CTGTTGAATG ATTCGGTCAA AGTGATCCCG CCAGTCACCC TGCCTAAGCT GACAAAACAT
AGCAAGCTGA CCGACACGCC CACGCTATCG CTATTGATAA GCGACGAGAA AGACCTGCAC
CTTTGTGATG TCACCGACGC CGATATCTAC TTTAAACTAC CGGAAAGCTT CAAGAAAAAC
TGCACTAAGT ACATAGATAT CTTGTTAAGA AATCCAAGGC TGATCCCCTG GTTTCCCGCC
GTACTCATAG GCAAAGACTA TCTCGAAGCG GTCAAAATTC TTGAGCGAGT CAAGCCTGCG
CGAATCGTCA CCAATAACAC CGGGGTGGCA TACAAGGCGT ATGAGATGGA CATCAGCTGG
ATAGCCGGGC CTTTCCTCAA TACGACCAAC TCCTATGCGC TATTAACCCT GCAGGAAGAG
CTGAATTGTG CCGGGGCGTT TATCTCCAAC GAGATCAACC AAAATCAGAT CAGAAATATT
GCGCGGCCGG AAAACTTTAA GTTGTTATAC AGCATCTATC ACCCCATCCT GATGATGACC
AGCAGACAGT GTTTCTTCCA ACAGACCGTC GGCTGCAACA AGCCCGCTAT CGAAGATGGT
TGTATGCTCA AGTGTGAAAA AGCCACCACC ATCACCAATG TGAAGGGGAT CTCTTTTGCC
GTCGACAAGC AAAAAGGCGG TTATCCCAGC ATCTATAACC ATGAGCAGTT CTTGAATATG
GATGTCATCG ATGATTTCTC ACACCTGTTC GATGAGTTCT TTATCGATCT GACCAATATT
GGCTCGGGCT CCAAGGCGGA GCTGGATAAA GTCCAGTTAA TCCATCACTT TGAAAACCTA
ATCAAGGGTG ACGGTGAAGC TAAAGCGCAG CTCGATGCCA TGGTGACAGT GTCGACCCAT
GCCCAGTACA GCCAAGGGCT GTGA
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| Protein sequence | MSRKIELLAP GGDVDAIKAA IVAGANAVYC GLDTFNARNR ATNLSFDDLM GVIELAHQYQ
CEVFLTMNIV ILEHEITGLV KLLNQIVNIG IDGIIVQDLG IFNLVKKHFP TLAVHASTQL
TTHNPGQIRF LAKVGATRAN LSRELNLGEI KSLTTLAHEH DVLTEVFVHG ALCIAFSGQC
YSSSVSVGNS GNRGRCSQAC RDEYEITNAG NKFPLNLKDN SAYFDLPELV DAGVDSLKIE
GRIKGAQYVH TVVDSWRQQI DKFVETGQLL SDNTNLYKVF NRDFTNSFLK GDLTKNMFID
NPRDNSFQHA NDKHNAISVV QIQAVQKDLS EEKNAIGARV VEKIQHLSIA KQALTIRFSG
QAGKPLTVDV TAGKHEFCVQ SEMPLIASEQ AAVDQSAIEK RFKSLQQGKY ALQAFDFSGL
DTGLNMPFKE LTRIKKQVAF LLNDSVKVIP PVTLPKLTKH SKLTDTPTLS LLISDEKDLH
LCDVTDADIY FKLPESFKKN CTKYIDILLR NPRLIPWFPA VLIGKDYLEA VKILERVKPA
RIVTNNTGVA YKAYEMDISW IAGPFLNTTN SYALLTLQEE LNCAGAFISN EINQNQIRNI
ARPENFKLLY SIYHPILMMT SRQCFFQQTV GCNKPAIEDG CMLKCEKATT ITNVKGISFA
VDKQKGGYPS IYNHEQFLNM DVIDDFSHLF DEFFIDLTNI GSGSKAELDK VQLIHHFENL
IKGDGEAKAQ LDAMVTVSTH AQYSQGL
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