| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3744 |
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| Symbol | |
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| ID | 5609741 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4558047 |
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| End bp | 4559768 |
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| Gene Length | 1722 bp |
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| Protein Length | 573 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640934698 |
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| Product | nitrite reductase (cytochrome; ammonia-forming) |
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| Protein accession | YP_001475476 |
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| Protein GI | 157376876 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3303] Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGATTAC AAAAGCTTGC GGTTGCTATT GCGGTATCTG CTGTTTTAGT TGGTTGTAGC
GATGATGATG ACACACAATT AATTACCTGT GGTGAGGGAT CGCTACTCAA CCCGGATACT
AACATCTGTG AAGTACTTCC CGTTGACCCT GTAGAGCCCG TCGATCCGGT TGTGTGTGGT
GAAGGAACCG TTTTAGATAC GGAAACCAAT ACCTGTATCG TTCCGCCAAC ATCAGGGCCT
GTTGATCTAT ACAACAGCGA TAACTGGCAG GAGACCTTCC CTGATCAGCA TGCTACTTGG
GCTAGTAGCG AAGAGAACAC CCCGGAATCT GGCACGCCAA CAGATCTACT GGAAGCAAAC
CCTAATCTGG TCAGTGCATG GGCTGGCTAT GGATTTGCGA AAGATTATAA CCGCGCCCGA
GGTCACCAGT TTGCATTAAC CGATGTAATG AAGTCCTTGC GAACAGGCAG CCCAATTGTC
GGTCACGACG GTAACGTTGT TGGTGAAGCG ATGGCTGCAT CTTGCTGGTC TTGTAAGTCT
CCAGACGTTG CTCGCATGTA CGATCTTGTC GGCGAAGACA AGTTTGCTAA CAACAGCTGG
TCCACTTGGG GCCATGAAAT GAGTAACTCC GTTGGTTGTG CCGATTGTCA TGAGTTGGGT
GGAATCGACT TACGTCTAAG CCGTCCATAC GCTGACCGTG CTATGACTAA AGTTGGCCTA
ACGTTCGAGG AGCAAGATCA CAACGGTCAA GCCAGTCAAA CCTGTGCTCA GTGTCACGTT
GAATACTATT TCGATGGCAC AGACAGTAAA AAGGTTCGCT ACCCATGGGA TCATTGGGTA
CCAGGTGTAG AAACCGATTA CGCCAGCGTC GTTAGCTACA CAGGTGACGA CATGCTTTAT
AAAGGTTTCG CTGCCGAAGC TCAGTTAGCC TACTACGATA ACATCAACTT TAAAGACTGG
ACTAACGCGA TATCTGGTAC TCCTTCGCTA AAAACACAGC ATCCTGAATA TGAGAACTTA
ATGGATAGAA CATCTCATGT GATGCCTAAC CATCTTGAGT TCAGCTGTAA TACTTGTCAC
ATGCCGAAAG CTGAAAATGC GGAAGGGCTT GAGTACTCCA ACCACAACGT TAAGTTTGAT
CCTGCTAAGT TACCAAGCAG CTGTAAAGGG TGTCACGATG ACAGCGCGAT TGAGTCTATG
CTGGAGTCGA GAAAAACTGC AATCAATAAC CTTCGCTTTG CAGCCACAGG TACTGACCCA
CGTCTGACAG AGGCGCACTT TAAGGCACAG GCTATCTGGG CTGCGAACGG TGTTGAAGGC
ATCGATGCAG GCAAAACCAT AGGTGAAGCT AAAGGCAACT ATGAGGCAGC ACTTAAAGCC
GGTAATGATT TAGCTACCGA AATGAATAGC CTGCTAGGTA AAATCCGTAA CGCACAGTGG
TTCTGGGATA GCGCTACCGC ATCTCACGGT ATGTATGCTC ATAACTTCAC AGAAGCAAAA
CGTCTGTTGG TTAAGTCTAA TACTGTCTTA GACGGTGCGA TTGCCGAAGC TGACGTACTA
CTTGCTAAAT ATGCGCCTAG CTACGTATAT GACGCAACTA AGTACGACAC TAAGGCGAAA
GTACAACCTG AAGCCGGTCT TAACTATGAC GCCATGAAAG CTGCTAAAGA TGAGTTTATC
AATGAGCGTG TTAAGAAAGA GTGGCCAATC GAACTTCGTT AA
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| Protein sequence | MRLQKLAVAI AVSAVLVGCS DDDDTQLITC GEGSLLNPDT NICEVLPVDP VEPVDPVVCG
EGTVLDTETN TCIVPPTSGP VDLYNSDNWQ ETFPDQHATW ASSEENTPES GTPTDLLEAN
PNLVSAWAGY GFAKDYNRAR GHQFALTDVM KSLRTGSPIV GHDGNVVGEA MAASCWSCKS
PDVARMYDLV GEDKFANNSW STWGHEMSNS VGCADCHELG GIDLRLSRPY ADRAMTKVGL
TFEEQDHNGQ ASQTCAQCHV EYYFDGTDSK KVRYPWDHWV PGVETDYASV VSYTGDDMLY
KGFAAEAQLA YYDNINFKDW TNAISGTPSL KTQHPEYENL MDRTSHVMPN HLEFSCNTCH
MPKAENAEGL EYSNHNVKFD PAKLPSSCKG CHDDSAIESM LESRKTAINN LRFAATGTDP
RLTEAHFKAQ AIWAANGVEG IDAGKTIGEA KGNYEAALKA GNDLATEMNS LLGKIRNAQW
FWDSATASHG MYAHNFTEAK RLLVKSNTVL DGAIAEADVL LAKYAPSYVY DATKYDTKAK
VQPEAGLNYD AMKAAKDEFI NERVKKEWPI ELR
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