| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3739 |
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| Symbol | metH |
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| ID | 5611227 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4550071 |
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| End bp | 4553829 |
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| Gene Length | 3759 bp |
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| Protein Length | 1252 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640934693 |
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| Product | B12-dependent methionine synthase |
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| Protein accession | YP_001475471 |
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| Protein GI | 157376871 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0646] Methionine synthase I (cobalamin-dependent), methyltransferase domain
[COG1410] Methionine synthase I, cobalamin-binding domain |
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| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCACTG GCACCCTAAG TAACTCAAAA AAAATAAGAG ATATTGGCCC ACAGATCAGC
CAACAGCTAA AAGACAGTAT CCTGATCCTC GACGGCGCCA TGGGCACCAT GATCCAGGAC
CGCAAGTTTG AAGAGGCCGA CTTTCGTGGC GAGCGCTTCA ACGAGTGGCC CTGCGACGTC
AAAGGCAACA ACGACCTGTT AGTGCTCACT CAGAGCGCCG CCATCAAGCA GATCCACAAA
GATTACCTGC TCGCCGGTGC CGACATTATC GAAACCAACA CCTTCAACGC GACCCGCATC
GCTATGGCCG ATTACGACAT GCAGGAGCTC TCGGCAGAGA TCAATCTGAA TGGCGCCCGC
CTTGCCCGCG AAGCGGCCGA TGAGGTTGAA GCCGAGACAG GCCGTGCCTG CTATGTGGCC
GGCGTATTAG GCCCGACCAA CCGCACCTGC TCCATCAGCC CCGATGTAAA TGACCCCGGC
TTTCGTAATG TCAGCTTCGA CGAGCTGGTC GAGGCCTATA TCGAGTCTAT CGATGCGCTT
ATCGAAGGTG GCTCGGATAT CATCATGGTG GAAACCATCT TCGATACCCT GAACGCCAAG
GCCGCACTGT TTGCCATCGA AACCGTGTTC GAGAACTTAG GTACGCGCCT GCCTATCATG
ATCTCAGGCA CCATCACAGA TGCGTCGGGT CGCACCCTGA CAGGCCAGAC AACCGAGGCC
TTCTACAACT CGCTGCGCCA TGTAAAGCCG CTGTCTATCG GCCTTAACTG TGCACTGGGC
CCGAAAGAGC TGCGTGCCTA CGTCGAAGAG CTATCGAAAA TATCCGAGTG TTATGTCTCG
GCGCACCCCA ATGCGGGCCT GCCGAACGAG TTTGGTGGCT ACGACGAGAC GCCCGCCGAG
ATGGCCGAAG TCATAGGCCA GTGGGCCGAA GAGGGATTTT TAAATATCGT CGGCGGCTGC
TGCGGCACCA CGCCCGACCA TATCCGCGCG ATCCGCGAAG CCGTCATCAA ACACCCGGCG
CGCGCCCTGC CCGACATCCC GGTGGCCTGC CGTCTGTCAG GCCTCGAGCC GCTCACCATA
GATGCCAACT CGCTGTTTCT GAACGTGGGT GAACGCACCA ACGTCACCGG CTCGGCCAAG
TTTCTGCGGC TGATCAAGAC CGGCGAATAT GAGGAGGCGC TCTCTGTCGC CCGTGATCAG
GTGGAGAACG GCGCACAGAT CATCGATATC AACATGGATG AAGGCATGCT CGACGGCGTC
GAGATGATGC ACAAATTTCT CAACCTTATC GCCTCCGAGC CCGACATCTC ACGTGTGCCT
ATCATGATCG ACTCCTCGAA GTGGGAGGTG ATCGAAGCGG GCCTCAAGTG TATTCAGGGT
AAAGGCATCG TCAACTCCAT CTCCCTTAAA GAGGGTGAGG AGAAGTTTAT TCAGCAGGCC
AAGCTGGTTA AACGCTACGG CGCCGCGGCG ATTATCATGG CGTTCGATGA AGAGGGACAG
GCCGACACCA AGGCACGTAA AATTGAGATC TGTACCCGTG CCTATCGTGT GCTGGTAGAT
AAAGTGGGCT TCCCGCCGGA AGACATCATC TTCGATCCCA ACATCTTCGC CATCGCCACG
GGTATCGACG AGCACGACAA CTATGCGGTC GACTTTATCG AGGCCACCCG TGAAATTAAA
CGCACCCTGC CCCACGCCAT GATCTCCGGC GGAGTATCAA ACGTCTCCTT CTCGTTCCGC
GGTAACAACC CCGTACGAGA GGCGATTCAC GCCGTCTTCC TCTATCACGC CATTCAGGCG
GGCATGGACA TGGGTATCGT CAACGCGGGT CAGCTGGCCA TCTATGACGA TATCGATGCA
GAGTTAAAAG AGAGAGTAGA GGCGATTGTC CAAAACTTGC CCTGCACCGC TCTTGGTTCA
GATGGCAGCG AAACCAACAA CACCGAGCTT TTATTAGAGG TCGCAGAGAG GTTCCGCGGG
GATGGCAGTC AAACCGCCAA GAAGGAAGAT CTGGAGTGGC GCAGCTGGGA TGTCAATAAA
CGTCTTGCCC ATGCACTGGT TAAAGGGATC ACCGACTTTA TCGATGAAGA CACCGAAGAG
GCGCGAGCCA ATGCCTCCCG TCCGCTGGAT GTCATCGAAG GGCCTCTGAT GGACGGTATG
AATATCGTCG GCGACCTGTT CGGCTCGGGT AAGATGTTCT TGCCTCAGGT GGTGAAATCG
GCTCGGGTGA TGAAGAAGGC CGTGGCCTAC CTTAACCCCT ATATCGAAAA AGAGAAGGTA
CCGGGTCAGT CAAACGGCAA GATCTTGATG GTGACGGTAA AGGGCGACGT ACACGATATC
GGTAAGAACA TCGTCGGCGT GGTGCTGGCC TGTAACGGCT ATGAGGTGAT AGACCTTGGC
GTGATGGTGC CGGTGGAGAA GATCATCGAA GTGGCCAAGG CGGAGAATGT CGACATCATA
GGTATGTCCG GCCTTATCAC TCCGAGCCTC GATGAGATGG TGCATAACGT AAAATCGTTC
CATAAGGCAG GGCTCACCAT ACCCTCGATT ATCGGCGGTG CTACCTGCTC GAAAATTCAT
ACCGCGGTCA AGATTGCCCC CCACTCCCCC GAGGGCGCCA TCTATATCGC CGACGCCTCC
CGCGCCGTAC CTATGGTATC TAAACTCATC AATAACGAGA CTCGCCAGGC GACCATAGAT
GAGGCCTATC AAGAATATGA CATCATGCGC GAAAAGCGTC TGTCACAGGC GAAACGCAAA
GAGATCACCA CCATTGCGGC GGCCCGTGAT AACCGCTGCC AACACGACTG GGAAAACTAC
ACTCCATTTG TCCCTAACCA GCTTGGTCGT CAGGTGTTCG ATGACTACCC GCTCGAAGAC
TTAGTCGATC GCATCGACTG GACGCCGTTT TTCCGCAGCT GGGAGCTTCA TGGACATTTT
CCACGTATTT TAGATGACGA AGTGGTCGGC GCAGAGGCAC GTAAGCTGTT CCATGATGGC
AAGGCCATGC TTGAGAAGAT CATCGATGAG AAGTGGCTCA CCGCCAAGGC CGTCATCGGC
CTGTTCCCGG CCAACACGGT GAACCATGAC GATATCGAAC TCTACTCTTG TGATGGGACG
GACGAAACCC GCGAGAAACC AATAATGACC ACCCATCACC TGCGTATGCA GATAGAGCGT
GTGGGTAACG ACAACTTCTG TCTCGCCGAC TTTGTCGCGC CGAAAGACTC TGGCGTTGCC
GATTACATGG GCGGCTTTGC AGTCACCGCA GGTCATGGCA TCGACGAGCA TATCGAGCGC
TTCGAAGCCG ATCACGATGA CTACAATGCC ATCATGCTCA AGAGTCTCGC CGACCGTCTG
GCCGAAGCCT TCGCCGAGCG TATGCACGAA CGGGTACGTA AGGAGTTCTG GGGCTACGCC
AGTGATGAGG CGCTCGATAA TGAAGCGCTG ATCCGCGAGA AGTACAAGGG CATTCGTCCT
GCACCGGGGT ATCCGGCCTG CCCCGATCAC ACCGAGAAGG GTCTGCTTTG GGACCTGCTT
AAGCCCGATG AGACGATCGA TCTTAACATC ACCGAAAGCT ACGCCATGTT CCCGACGGCG
GCAGTATCAG GCTGGTACTT CGCCCATCCT AAGTCGCGTT ACTTTGGCGT GACCAATATT
GGCCGGGATC AGGTAGAGGA TTATGCGGCG CGTAAGGGGA TGAGTGTGGC AGAAACAGAG
CGGTGGTTGG CACCAGTGTT GGATTATGAT CCTGAGTGA
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| Protein sequence | MATGTLSNSK KIRDIGPQIS QQLKDSILIL DGAMGTMIQD RKFEEADFRG ERFNEWPCDV
KGNNDLLVLT QSAAIKQIHK DYLLAGADII ETNTFNATRI AMADYDMQEL SAEINLNGAR
LAREAADEVE AETGRACYVA GVLGPTNRTC SISPDVNDPG FRNVSFDELV EAYIESIDAL
IEGGSDIIMV ETIFDTLNAK AALFAIETVF ENLGTRLPIM ISGTITDASG RTLTGQTTEA
FYNSLRHVKP LSIGLNCALG PKELRAYVEE LSKISECYVS AHPNAGLPNE FGGYDETPAE
MAEVIGQWAE EGFLNIVGGC CGTTPDHIRA IREAVIKHPA RALPDIPVAC RLSGLEPLTI
DANSLFLNVG ERTNVTGSAK FLRLIKTGEY EEALSVARDQ VENGAQIIDI NMDEGMLDGV
EMMHKFLNLI ASEPDISRVP IMIDSSKWEV IEAGLKCIQG KGIVNSISLK EGEEKFIQQA
KLVKRYGAAA IIMAFDEEGQ ADTKARKIEI CTRAYRVLVD KVGFPPEDII FDPNIFAIAT
GIDEHDNYAV DFIEATREIK RTLPHAMISG GVSNVSFSFR GNNPVREAIH AVFLYHAIQA
GMDMGIVNAG QLAIYDDIDA ELKERVEAIV QNLPCTALGS DGSETNNTEL LLEVAERFRG
DGSQTAKKED LEWRSWDVNK RLAHALVKGI TDFIDEDTEE ARANASRPLD VIEGPLMDGM
NIVGDLFGSG KMFLPQVVKS ARVMKKAVAY LNPYIEKEKV PGQSNGKILM VTVKGDVHDI
GKNIVGVVLA CNGYEVIDLG VMVPVEKIIE VAKAENVDII GMSGLITPSL DEMVHNVKSF
HKAGLTIPSI IGGATCSKIH TAVKIAPHSP EGAIYIADAS RAVPMVSKLI NNETRQATID
EAYQEYDIMR EKRLSQAKRK EITTIAAARD NRCQHDWENY TPFVPNQLGR QVFDDYPLED
LVDRIDWTPF FRSWELHGHF PRILDDEVVG AEARKLFHDG KAMLEKIIDE KWLTAKAVIG
LFPANTVNHD DIELYSCDGT DETREKPIMT THHLRMQIER VGNDNFCLAD FVAPKDSGVA
DYMGGFAVTA GHGIDEHIER FEADHDDYNA IMLKSLADRL AEAFAERMHE RVRKEFWGYA
SDEALDNEAL IREKYKGIRP APGYPACPDH TEKGLLWDLL KPDETIDLNI TESYAMFPTA
AVSGWYFAHP KSRYFGVTNI GRDQVEDYAA RKGMSVAETE RWLAPVLDYD PE
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