| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3738 |
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| Symbol | |
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| ID | 5610045 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4546732 |
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| End bp | 4549584 |
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| Gene Length | 2853 bp |
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| Protein Length | 950 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640934692 |
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| Product | Na+/proline symporter-like protein |
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| Protein accession | YP_001475470 |
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| Protein GI | 157376870 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only
[T] Signal transduction mechanisms |
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| COG ID | [COG0591] Na+/proline symporter
[COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGAGCG CCTCCAGCCT TCTGCTGGTG ATATTTTCCT ATGTGGCCCT GCTGTATATG
CTGGCGTCAT GGGCCGAGTC CGGCAGTGAA CGGGCCAGGA AGCTGACAAC CAGTGCCGCA
GTTTATGCGC TGTCACTCGC CATCTTTTGT ACCAGTTGGA CCTTCTTTGG TAGTGTCGGT
TTCGCTACCC GTTCCAGCAT ATTGATGCTC TCTATCTATC TTGGGCCGAC ACTCTTGATG
ATCGTTATCT GGCCCTTGAT GCAGCGAGTG TTGCTGATAA AACAGATCTA CAGGGTTACC
AGCATCGCCG ACTTCCTTTC GGCCCGATTC AACCGCAGTA TCTTCCTTGC CGGCCTCGCC
GCGACCGTCG CCATGGTGGG GATCGTTCCC TATCTGGCGC TGCAACTCAA AGCGATAAAC
ACCGCCATCG ATCTCGTCCT GGAGACCGAA GACGGTGTTG CGGCCAATGA GATTGCCTGG
CTGGTCTGGT TGGGCGTCGC CCTGTTTACC ATTATCTTCG GTATTCGACA TCTGGATCCC
ACCGAGAGGC ACCCGGGCAT GATGCTGGCG CTCGCTGTCG AGGGAATGGT TAAATTGCTG
GCCATGCTGT CTGTGGGGGT GTTTGTCGGT TTTGTGATGT TTGATTCTCC ACTGGTCATC
CTCGAGCTGC TTGAACAGAA GATGCCCGAG GCGGCTCAGG GGATGTCATC CAAGCCCGAG
TTTGTCACCT GGGTCAGTTA TCTGCTGCTC GCAGGTTCCG CCTTTATGTT ACTGCCACGC
CAGTTTCATG TCATGGTGGT TGAAAATCCC GATGTGAAAC ATATTAAGAA GGTGCAGTGG
TGGCTGCCCA TCTATCTGAT ATTAATGACT ATTTTTATCA CGCCTATAGC CGCTGCGGGT
ATGTTACTGC TTGGTCCGGA AACGGCGGAT AGTTATATGC TATCCCTGCC TATGCTTGCC
GGGCAGGATC TGCTCACCCT ATTCGTATTT ATCGGCGGTT TCTCTGCCTC TATGGCCATG
TTGATGGTGT CCGGCATGAC GCTCTCCACC ATGTTCAGTA ACCATTTAGT CCTGCCTCTG
CTGCAGTGGA GTAATCCGGG TAGCGGCTTG AAAAGGTACC TGCTTCAGTC CAGGTGGCTG
GCGGTGTTTA TTGTGCTGGG GGCGGGACAG ATGTTCTACC TCTATCTGGG TGAGTCATAC
ATGTTAGTGA ACATGGGCAT GATCTCCTTC GCCGCCGTAT TGCAATTTCT CCCCTTAGTG
ATTGCCGGAC TCTATTGGCC TAAGGTCACC GCAAAGGGGG CCTCTGCGGG CTTGATGGTG
GGCTTTATTG TGTGGGCATA CTGCCTGCTA CTGCCCGCGA TAATGAAGAG TGGCTGGATA
GATGCGGATA TTCTTGAGTT AGGGCCATGG GGACTCTATT GGTTGCACCC CGAACACCTG
ATGGGCACCG AGATGGATAA GATAAGCCAC GGGGCATTGT GGTCTCTGGC GGGAAACGTC
ACAGCCTTGG TCTTTGGCAG CCTGTTCTCG AAGGTGACGG GAGAGGAGCA GAGATATAAC
GCCGAGTTTA TGGATGTTAT GGCTGAGCGC GTCGCCGAAG ACGAGGCGAT TATGGATACC
TTGCCCCGTA ATATTGAGCT CAAACCTAAG TTGAAGTTAC TGAAGGGAAT ATTTGGGCAG
TACCTACCTG CCGAACAGGC TGAAGTTAAA GTGAAAGCCT GTTTAGTCGA GGCTGAGCTC
AATGATGATG AGCTGATTAA TGTGCAGGAG CTGGCCTATC TGGAGAGGGC GACAGAGAGA
TTGCTCAGCG GTATCACCGG AGCCGCGGTG GCTCATATGG TGGTCACTCA ATCAAACATC
TATTCAGAGA AAGAGAGTAT GACTCTGGAG CGCTATTATG CCCAGTTGCT GGCTCAGTTG
AAGATCAGTC CCGCTCAACT GCGGCAGCAA CTGAACTACT CGAAAGAGAA GGAGCAGTTT
GCTCAGCGAT ACTCAGAGCA GATGGAAAAA CTGGTGGAGG AGAGAACCCG TGAGCTTCGC
TCGACGCTGG ATCAACTTAA GAGTGCTCAG CATAAACTGG TTGAGACGGA GAAACAGGCG
TCGTTAGGTA AGATGGTGGC GGGCATTGCC CATGAGATCA ATACCCCAAT CGGTGTCTGT
GTCACCGCGG CGTCCCACCT TCATGATGAG GTGATCGAGG TCAAGAAGAT GTTCTCAGAT
GGTGAGCTCA GTGAAGATGA ATTTGCAGGT TTTATGCAAA CCTGCATCGA AGCCATGGAT
ATTATTCTTA AGAATAATGC CCGAGCCTCT AAGTTAATTC AGAGCTTCAA GCGGGTTGCG
GTCGATCAAT CCAGTGAGGA GTTGCGGGAG TTCGAGCTCA ATGAGTATCT CGAAGAGATA
TTGATGTCGC TCAGGCCGAC ACTCAAGAAG GTGCCCCATG AGATAAAGAT CGACTGTGAC
TTCAGCTTAA GCTGTAACAC CTATCCCGGT GTCCTGTCTC AGGTTATAAC TAATCTGATC
ATGAATAGCC TGCTGCATGC ATTTCTCCCG GAGCAGGTGG GAGAGATCAT CATAACCGTA
AAAATCAGAG ATGATTGGGT ATTACTGGAT TATCGCGATG ATGGTATCGG ACTCGATGAA
GAGGGAGTGA AGAGTCTGTT CGACCCTTTC TATACGACAA AGCGTAATCA GGGGGGCAGC
GGTTTGGGGA CCCATCTTGT GTACAATTTG GTCACGCAAA AACTCAGGGG CGAAGTTGAG
ATTGAGACCT CACCCAATCA GGGACTCTGT TATCACATAC GTTTCCCAAG GAACCTACAG
AAGCTTGAGC GGGATCTGGG TGAGCATATT TAG
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| Protein sequence | MMSASSLLLV IFSYVALLYM LASWAESGSE RARKLTTSAA VYALSLAIFC TSWTFFGSVG
FATRSSILML SIYLGPTLLM IVIWPLMQRV LLIKQIYRVT SIADFLSARF NRSIFLAGLA
ATVAMVGIVP YLALQLKAIN TAIDLVLETE DGVAANEIAW LVWLGVALFT IIFGIRHLDP
TERHPGMMLA LAVEGMVKLL AMLSVGVFVG FVMFDSPLVI LELLEQKMPE AAQGMSSKPE
FVTWVSYLLL AGSAFMLLPR QFHVMVVENP DVKHIKKVQW WLPIYLILMT IFITPIAAAG
MLLLGPETAD SYMLSLPMLA GQDLLTLFVF IGGFSASMAM LMVSGMTLST MFSNHLVLPL
LQWSNPGSGL KRYLLQSRWL AVFIVLGAGQ MFYLYLGESY MLVNMGMISF AAVLQFLPLV
IAGLYWPKVT AKGASAGLMV GFIVWAYCLL LPAIMKSGWI DADILELGPW GLYWLHPEHL
MGTEMDKISH GALWSLAGNV TALVFGSLFS KVTGEEQRYN AEFMDVMAER VAEDEAIMDT
LPRNIELKPK LKLLKGIFGQ YLPAEQAEVK VKACLVEAEL NDDELINVQE LAYLERATER
LLSGITGAAV AHMVVTQSNI YSEKESMTLE RYYAQLLAQL KISPAQLRQQ LNYSKEKEQF
AQRYSEQMEK LVEERTRELR STLDQLKSAQ HKLVETEKQA SLGKMVAGIA HEINTPIGVC
VTAASHLHDE VIEVKKMFSD GELSEDEFAG FMQTCIEAMD IILKNNARAS KLIQSFKRVA
VDQSSEELRE FELNEYLEEI LMSLRPTLKK VPHEIKIDCD FSLSCNTYPG VLSQVITNLI
MNSLLHAFLP EQVGEIIITV KIRDDWVLLD YRDDGIGLDE EGVKSLFDPF YTTKRNQGGS
GLGTHLVYNL VTQKLRGEVE IETSPNQGLC YHIRFPRNLQ KLERDLGEHI
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