| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3707 |
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| Symbol | |
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| ID | 5610858 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4511899 |
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| End bp | 4513116 |
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| Gene Length | 1218 bp |
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| Protein Length | 405 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640934660 |
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| Product | beta-ketoadipyl CoA thiolase |
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| Protein accession | YP_001475439 |
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| Protein GI | 157376839 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0183] Acetyl-CoA acetyltransferase |
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| TIGRFAM ID | [TIGR01930] acetyl-CoA acetyltransferases
[TIGR02430] beta-ketoadipyl CoA thiolase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.394558 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTCAA ATAAGCTGAA AGATGTCTAT ATCTGCGATG CGGTCAGGAC ACCGATAGGT
CGCTATGGTG GGGCATTATC TTCCGTTCGG GCCGATGATT TAGCAGCCTT ACCACTTAAG
GCCTTGATGG AGCGAAATCC GGGAGTCGAT TGGCAGGCTG TCGATGATGT GCTGCTGGGA
TGCGCTAACC AGTCTGGCGA AGATAATCGC AACGTTGCCA GAATGGCGGC TCTGTTGGCC
GGCCTGCCTC AAGAAGTCCC CGGCTGTACG GTGAACCGCT TGTGTGGTTC GGGTCTTAAT
GCCATTGGCG ATGCGACCCG CGCGATCAGC TGTGGTGAAG CCGAGCTGAT GATCGCAGGC
GGCGTCGAGA GTATGTCACG CGCTCCTTTC GTCATGCCCA AGGCCACGAC ACCCTTTTCA
CGCTCAACCG AGTTCTATGA CACCACCATG GGATGGCGTT TTATCAATCC TAAACTCGAT
GCCGATTATG GCACCGAGGC GATGCCTCAG ACGGCGGAGA ACCTGGCCAA CGACTTTGGC
ATAAGCCGGG AAGATCAGGA TAAGTTTGCT CTCTGGAGTC AGCAAAAAGC GGCGGCGGCA
CAGGAGGATG GGCGATTTGC AGAGGAGATT ATCGAGGTGA GCATTCCTAT GCGCCGCGCC
GATCCTGTGC TCTTCAGTCA AGATGAGCAT CTGCGCGGGA CGAGTCTGGA TAAACTTGCC
AAGTTAAGGC CCCTGTTCGA TGGCGGTTCA ATCACGGCGG GTAATGCCTC GGGAGTTAAT
GATGGGGCTG CGGCCTTGCT GCTTGCTTCG GCTGATGCAG TTAAGAAACA TGGTCTCAAG
CCCAAGGCGA GAATATTGGG CATGGCGGTT GCGGGCGTAC CACCAAGAAT TATGGGAATA
GGCCCTGTTC CTGCTACCCG TAAGTTGCTC AAGAGGCTTT CACTCACTCT GGATGATATG
GATATCCTCG AGTTTAATGA AGCCTTTGCC GCTCAGGCTT TAACCTGTAC CAGAGAGCTT
GGGCTGAAGG ATGATGACCT CAGGATAAAT CCACAGGGCG GCGCTATCGC GCTCGGCCAC
CCTTTAGGCA TGAGCGGTGC ACGTCTGGCC ACCAGTGTGA CCTATCAGCT AGAGCGAACT
CAGGGAAAGC TGGCGTTATG CACCATGTGC GTAGGTGTGG GGCAAGGGAT CGCTATGGTA
ATAGAGAGAG TGGAGTAA
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| Protein sequence | MSSNKLKDVY ICDAVRTPIG RYGGALSSVR ADDLAALPLK ALMERNPGVD WQAVDDVLLG
CANQSGEDNR NVARMAALLA GLPQEVPGCT VNRLCGSGLN AIGDATRAIS CGEAELMIAG
GVESMSRAPF VMPKATTPFS RSTEFYDTTM GWRFINPKLD ADYGTEAMPQ TAENLANDFG
ISREDQDKFA LWSQQKAAAA QEDGRFAEEI IEVSIPMRRA DPVLFSQDEH LRGTSLDKLA
KLRPLFDGGS ITAGNASGVN DGAAALLLAS ADAVKKHGLK PKARILGMAV AGVPPRIMGI
GPVPATRKLL KRLSLTLDDM DILEFNEAFA AQALTCTREL GLKDDDLRIN PQGGAIALGH
PLGMSGARLA TSVTYQLERT QGKLALCTMC VGVGQGIAMV IERVE
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