Gene Ssed_3705 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3705 
Symbol 
ID5610856 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp4509140 
End bp4510765 
Gene Length1626 bp 
Protein Length541 aa 
Translation table11 
GC content49% 
IMG OID640934658 
Productmethyl-accepting chemotaxis sensory transducer 
Protein accessionYP_001475437 
Protein GI157376837 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0963791 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTCAACT TACAGATTAA ACAAAAAATG ACACTGGGAT TGTTAGTCCC GTTAATTCTA 
TTAATCAGCA TCTGTTTTTT AGCTGTTAAC ATGATGGGGA AGATCGAAGC CGGTGTCAGC
AGCATATATA ACGACAGGGT CGTGCCTCTG GAAGACCTGA AAATTATCGG CGATGACTAT
GCGGTCTCGG TTATCGATGC CGTCAATAAG GCCAATGCCG GTATGTTTAG TGCTGGTGAA
GCAAGCCGTG CTATGACTGA ATCCAGCCGA AATATTAGTG AAAAATGGGA TGGCTACATG
GCGACAACCT TGACCGATGA GGAGTCCAGG TTAGCTAAGG AAGCCAATCG ATTATTCACG
CCAGCCAATC AAGCAATCTC TCAACTTGTT AGTAAGCTCA ATAGCATGCA AGGGGCGGCT
ACTGGTCAGT TGAATGATGA TATTGCCCCA CTCTACGATG TGATAGACCC TATCAGCGGA
AAAATTGCTG AGCTGGTCAG CCTTCAGTTA AGGGTCGCTG GCGAGGAGAA AGACAAGGTA
GATGAGATTT ACTCATCTTC GATGAAGATT TTTATCGTCT TGACCCTGAT TGCCATAGTA
GCGAGTGTCT TGATTGGCCT CTGGGTGACA AAGGCCGTGA TGCGTCCCAT AGATAATATT
GTTACCACGT TGAACACCGT CCGGGTCGAT TCTGATCTGA CTGTGAAATT TAAGACCTTT
AATGACGATG AGCTGGGGCA GATCTCGACC AACCTGACCC TGGTGATTGA GCATCTTCGT
GGCATTCTTA ACTCTATTGC ACTCGCTGCC AATACTGTCG GAGATTCGAC TGTAAAGTTG
AGTGAGTTTA CTCAGCAAAC CAATGACAGA ATGCATCAGC AGCAATCGGA AACTGAGCAG
ACTGCAGCGG CGATGAATGA GATGACGGCA ACTGTTGCCG AGGTGGCGCA AAGCGCGACT
AACGCCGCCG ATTCCGCCAA AGATGCTGAA GGCAATGCGA CTAAAGGTAA TGGCATCGTT
CAGCAATCGG TTTCCAGCAT GTCTCAGCTC TCTAAGCAGA TAGAGCAAAC CTCTGAGGTG
ATCACCCATC TGGCCAGTGA GAGTCAAAAT ATCGGTAGTG TTCTGGATGT GATCAAGGGC
ATCGCCGAGC AGACAAACCT GTTGGCGTTA AATGCTGCCA TTGAGGCGGC CCGTGCCGGT
GAACAGGGAC GAGGCTTCGC GGTGGTGGCC GATGAGGTGA GAACCTTGGC ACAGAGAACC
CAGGAATCGA CCCAAGAGAT TGAATCTATG ATCGATGGTT TACAAAAAGG GGTTCAGGAA
GCCGTAGGCG CCATGAAGGT GGGTACAGAG CAGGTTTATG ATGCCAATGA AAAAGCCAAC
ATGGCCGGTG AAGCGCTAAA TGAGATTGTA CTCTCCGTCG ATAATATCAG TAACATGAAT
ACTCAGATCG CCACGGCAGC CGAAGAGCAA AGCAGTGTCG CCGAAGACAT AAACCGAAGT
ATCATTGCCA TCAGTGATAT CGCGCAAACC TCTACCACGG CGGCTCAAGA GCTGACGAGT
TCGGTGGAAG AGCTAACCAG CCTGTCTGAA AGTATGCGTG AACAGGTGAG CCAATTTAAG
CTCTAG
 
Protein sequence
MVNLQIKQKM TLGLLVPLIL LISICFLAVN MMGKIEAGVS SIYNDRVVPL EDLKIIGDDY 
AVSVIDAVNK ANAGMFSAGE ASRAMTESSR NISEKWDGYM ATTLTDEESR LAKEANRLFT
PANQAISQLV SKLNSMQGAA TGQLNDDIAP LYDVIDPISG KIAELVSLQL RVAGEEKDKV
DEIYSSSMKI FIVLTLIAIV ASVLIGLWVT KAVMRPIDNI VTTLNTVRVD SDLTVKFKTF
NDDELGQIST NLTLVIEHLR GILNSIALAA NTVGDSTVKL SEFTQQTNDR MHQQQSETEQ
TAAAMNEMTA TVAEVAQSAT NAADSAKDAE GNATKGNGIV QQSVSSMSQL SKQIEQTSEV
ITHLASESQN IGSVLDVIKG IAEQTNLLAL NAAIEAARAG EQGRGFAVVA DEVRTLAQRT
QESTQEIESM IDGLQKGVQE AVGAMKVGTE QVYDANEKAN MAGEALNEIV LSVDNISNMN
TQIATAAEEQ SSVAEDINRS IIAISDIAQT STTAAQELTS SVEELTSLSE SMREQVSQFK
L