| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3688 |
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| Symbol | |
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| ID | 5614181 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4490466 |
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| End bp | 4491134 |
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| Gene Length | 669 bp |
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| Protein Length | 222 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640934641 |
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| Product | uracil-DNA glycosylase |
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| Protein accession | YP_001475420 |
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| Protein GI | 157376820 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0692] Uracil DNA glycosylase |
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| TIGRFAM ID | [TIGR00628] uracil-DNA glycosylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGTAGAAC ATTCGAACTG GGATTCATTT ATTGAGGCTG AAAAGCTGCA GGATTATTTC
ACTCAACTTC AGGCATTTGT ATCTGCCGAG CGAGCCCAGG GTAAAGCTAT CTTCCCCCCC
CAAGATGAGG TGTTTAGCGC CTTCGAACTG ACGCCATTAG ACAGGGTCAG AGTCGTTATT
ATCGGTCAGG ATCCCTACCA TGGTCCGGAG CAGGCCCATG GTCTGTGTTT CTCGGTCAAG
CATGGCATTA AGACTCCCCC CTCATTGGTA AATATGTATA AAGAGCTCGT CGATGATATA
GACGGGTTTG TGACGCCAAA TCACGGGCAT CTGTCCAGCT GGGCTGAGCA AGGTGTGTTG
ATGTTAAATA CGGTGTTGAC CGTAGAGCAG GGCAAGGCCC ACTCACATGC CAAATCAGGT
TGGGAAACAT TTACGACTCA TGCACTGGAG TTATTGAATC GACAGACGAC ACCGATCGTC
TTTATTCTGT GGGGGGCTCA TGCCATTAAA AAGGGTAAGG TGATCACCGC GCCTCAGCAC
CATATCTTAT CCGGACCACA CCCCTCACCA CTCTCGGCTT ATCGGGGATT CTTCGGCTGT
AAACATTTCT CCAAAACCAA TGATTTGTTG GAGCTCGATG GGAGTGACCC CATTACCTGG
CAGGTGTGA
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| Protein sequence | MVEHSNWDSF IEAEKLQDYF TQLQAFVSAE RAQGKAIFPP QDEVFSAFEL TPLDRVRVVI
IGQDPYHGPE QAHGLCFSVK HGIKTPPSLV NMYKELVDDI DGFVTPNHGH LSSWAEQGVL
MLNTVLTVEQ GKAHSHAKSG WETFTTHALE LLNRQTTPIV FILWGAHAIK KGKVITAPQH
HILSGPHPSP LSAYRGFFGC KHFSKTNDLL ELDGSDPITW QV
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