| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3687 |
|---|
| Symbol | |
|---|
| ID | 5614180 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 4489964 |
|---|
| End bp | 4490482 |
|---|
| Gene Length | 519 bp |
|---|
| Protein Length | 172 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640934640 |
|---|
| Product | lipoprotein |
|---|
| Protein accession | YP_001475419 |
|---|
| Protein GI | 157376819 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3015] Uncharacterized lipoprotein NlpE involved in copper resistance |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTTC AATTCAATGC ACGCACTAAC CTGCCAGTTT TGGCACTGCT GGCGTTAATA
GCGACGGCGA CTACCGCCTG TTCGACTCAG CCACCGGAAC TGAAAGTAGA TATAGAAACA
GCCCGGTCTG GCGTTGATAG CTCAGCATCG GTTGCTCAAC TTCCCCTTGG CGACAATAGC
CAAAACGCCC TCGATTGGAA TGGCATCTAT TCGGGGATCA TCCCATGTGC AAGCTGCGAA
GGGATCAAGA CTCTACTGAC CCTTAAGCGC GATAACCATT ATATTCTGGA ATCTGAATAC
TTGGGCAGAA GTGATAAGAC TTTTATCGAG CAAGGGATGT TTGAGTGGAA CTCTACAGGT
AGTAAAATCA CCTTGAAACA GGAGCCCACC GACCAGAAAA CAGAAAAGCA GTTTCAGGTC
GGCGAGAACC AATTATTTTT ATTAGACAAG GCGGAAAATC GGGTTACCGG CGCATTGGCC
GACAGCTACC GCTTGATTAA AATCACACCT GCCAGGTAA
|
|---|
| Protein sequence | MKLQFNARTN LPVLALLALI ATATTACSTQ PPELKVDIET ARSGVDSSAS VAQLPLGDNS
QNALDWNGIY SGIIPCASCE GIKTLLTLKR DNHYILESEY LGRSDKTFIE QGMFEWNSTG
SKITLKQEPT DQKTEKQFQV GENQLFLLDK AENRVTGALA DSYRLIKITP AR
|
|---|
| |