Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3653 |
Symbol | |
ID | 5612789 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 4451668 |
End bp | 4453221 |
Gene Length | 1554 bp |
Protein Length | 517 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640934606 |
Product | nitrite reductase (cytochrome; ammonia-forming) |
Protein accession | YP_001475385 |
Protein GI | 157376785 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG3303] Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAATTA AAAAGCTGGC AATTGCTGTC ATGCTATCAA CCGTATTTAC CGGTTATAGT ATGGCAACAG AAGTCGATTT ATATAAAAGT GAAAATTGGA AAAAACAGTT CCCTGAACAA TATACTACTT GGGCTGAAAC AGAAGAGACC ACTCCTGAAT CAGGCAAATT GGATGACTTC TTAGCTTCTA ATCCAAACCT TGTCAGCGCT TGGGCTGGCT ACGGTTTTGC CAAAGATTAT AATCGTGCCA GAGGTCATCA ATTTGCGATG ACTGATATAA TAAAAACGCT GCGTACAGGG CACCCGGTTG TCGGCCATGA TGGTAAAGTC GTTGGCGAGG CAATGCCTGC TAACTGCTGG TCTTGTAAAA CACCCGATAT CGCTCGCATG TATGACAAGG TGGGGGAAGC TAATTTCTCT GACAATAGCT GGTCAACCTG GGGCCACGAA ATGTCTAATT CAATCGGTTG CGCCGATTGT CATGAGTTAG GCAGTGATGA AATCAGAATT AGTCGTCCCT ATGCCGCTCG AGCAATGAAA TCGATTGGCA AAGACTTTTC CAAGCAAACA CAGACTATGC AAGCCAGCCA GACTTGTGCT CAATGCCATA TTGAATACTA CTTCGAAGGT TCTGACAGTA AGAAAGTTCG CTACCCTTGG GATCATTGGG TGCCAGGTGT GAAAACTGAT TATAAAGAGG TTGTGAACTA CACCGGGACT GATGGCCTTT ATCAAGGTTT TGCGGCTGAA GCCAAGCTTG CTTACTATGA TCAGCGTAAC TTCAAAGACT GGACCAACGC CATTTCGGGC GTACCATCGC TCAAAGCACA ACATCCTGAA TATGAAAACA TGTTAGATCG AACTGAACAT GCGATGGATA ATCACTTAGA GTTTGGTTGT ACGACTTGTC ATATGCCTAA GGCGACCAAC AAAGCCGGGG CTAAGTACTC CAATCATAAG GTGACGTTTG ACGCTGAACA GCTGCCTGAA AGCTGCTTAA GTTGTCATGA GGGTGCTGAC TTCGAAGAGA TATTTGATGA GCGTAAAGCT GAAATCAAAA AGCTGCGTTT TACAGCCGAT GGCACAGATC CTCGCTTAAC TGAAGCCCAC TTTAAAGCAC AGGCAATTTG GTCTGCGAAT GGGATTAAAG GTCTCGAAGC AGGTAAGAGC ATTGGTGAAG CTAAGGGTAA CTATGAAGCG GCATTAAAAG CAGGTACTCC GTTAGCGGCA GAAATGGATA GTTTATTAAC TAAAATCAGA CATGGACAGT GGTTCTGGGA CAGTGCAACA GCGTCTCACG GTATCCATGC ACATAATCCT ACAGAAGCAG TACGTCTGCT GAAAAAGTCG AATTCGATTT TAGATGAAGC GATTGCCGAA GCCGATCTGT TATTAACTAA GTATGCGCCT AACTATGTTT ATGATGGCAG CAAATACGAT ACTAAAGCTA AGGTTCAACC TTTAGCGGGT CTAAATTTTG AAGCGATGAA AACCTCGAAA GACAATTTTA TCGAGAAGCG CGTTGAAAAA GAATGGCCCG TTGATTTGAA ATAA
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Protein sequence | MKIKKLAIAV MLSTVFTGYS MATEVDLYKS ENWKKQFPEQ YTTWAETEET TPESGKLDDF LASNPNLVSA WAGYGFAKDY NRARGHQFAM TDIIKTLRTG HPVVGHDGKV VGEAMPANCW SCKTPDIARM YDKVGEANFS DNSWSTWGHE MSNSIGCADC HELGSDEIRI SRPYAARAMK SIGKDFSKQT QTMQASQTCA QCHIEYYFEG SDSKKVRYPW DHWVPGVKTD YKEVVNYTGT DGLYQGFAAE AKLAYYDQRN FKDWTNAISG VPSLKAQHPE YENMLDRTEH AMDNHLEFGC TTCHMPKATN KAGAKYSNHK VTFDAEQLPE SCLSCHEGAD FEEIFDERKA EIKKLRFTAD GTDPRLTEAH FKAQAIWSAN GIKGLEAGKS IGEAKGNYEA ALKAGTPLAA EMDSLLTKIR HGQWFWDSAT ASHGIHAHNP TEAVRLLKKS NSILDEAIAE ADLLLTKYAP NYVYDGSKYD TKAKVQPLAG LNFEAMKTSK DNFIEKRVEK EWPVDLK
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