Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3649 |
Symbol | |
ID | 5612925 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 4446255 |
End bp | 4447106 |
Gene Length | 852 bp |
Protein Length | 283 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640934602 |
Product | hypothetical protein |
Protein accession | YP_001475381 |
Protein GI | 157376781 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG1639] Predicted signal transduction protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCAACTT CACCTCTTGA TTACGCCAAG CAAGCGCAAA AAATATGTGT GCTATCCGAT GTTTATATTA CATTGAACCG AATGCTATCC AGTGATGATT GCAGCATGGA GGAGTTGGCC GATGCCATTG CCTATGAGCC TGCTATTGCC GCATCTATTT TAAAAATCGC CAATAGTGCC ATGTTCAGCA TGCCAAGAGA GATAGACAAC CTCTCTAAAG CATTAGTCCT GCTTGGTATT AAGGAGGTAA AAAAACTGGT GAATGCCTAT GGTGTCACCG CGGCATTTTC CAGCATAGAT CCTAAAGTCG TGGATGTGGA TAAATTCTGG GAGATAAGTG TAGATTGTGC CTTGATTTGC CAGTATTTCG CCAAAAATAA GGACACTCCC GATACTGACA ACATCTTCTT GTCCGGGCTA TTTCATAACT TGGGGATGCT GGCCATTGTC CATAGCGAGC CTGATAAAGT CAGATATTGT GAGGGCTATG ACCGCGATGA AACCCCTTGG CTTCGCCAGA GCGAGGTGTT TGGTTTCACC TTTGCTGATT GCACTACCGA GTTGTTAAAG CTGTGGAACT TGCCGGACAC CATCATACAG CCCATTTCCC AGTTTAATCG CGCAGAGGGT GAACCATTGC CTGATAATAG CAAATTGCTA TATATTGCTT CGCGTTTAGC CGTGATTAAC GCCGAACCCG GGCTATATGC CAAGGAGGAG TTAATCAATC CGGATATTTT GGAAGATCTG GGTATCAGCT TAGATGAAAT AAACGAATCG CTTGAGTATT GTAACTTGCA AGGGATACAG CTTTTAGCGA CGTTTCCGAT ACAAGGCAGA ACGAGAGAAT AA
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Protein sequence | MSTSPLDYAK QAQKICVLSD VYITLNRMLS SDDCSMEELA DAIAYEPAIA ASILKIANSA MFSMPREIDN LSKALVLLGI KEVKKLVNAY GVTAAFSSID PKVVDVDKFW EISVDCALIC QYFAKNKDTP DTDNIFLSGL FHNLGMLAIV HSEPDKVRYC EGYDRDETPW LRQSEVFGFT FADCTTELLK LWNLPDTIIQ PISQFNRAEG EPLPDNSKLL YIASRLAVIN AEPGLYAKEE LINPDILEDL GISLDEINES LEYCNLQGIQ LLATFPIQGR TRE
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