| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3638 |
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| Symbol | |
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| ID | 5612648 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4431615 |
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| End bp | 4433834 |
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| Gene Length | 2220 bp |
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| Protein Length | 739 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640934591 |
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| Product | TonB-dependent receptor, putative |
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| Protein accession | YP_001475370 |
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| Protein GI | 157376770 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01785] TonB-dependent heme/hemoglobin receptor family protein
[TIGR01786] TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.000240989 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAACAAGC TCCAAGTTAG TGTACTGGCG CTGGCAGTCA CTGCAGCGCT ACATGCTCAA
GCCGAAGAGA TCTCTTCAGT ATCCAAATCA GAACAAGGAT CGCCCCCCGA AAAAACTGAA
GTAATAGTTA TTTCCGGCTC GCGTATGGAG CAAGAAATTC AACAGGTTGC GGGCTCAATC
TTAGTCATTG ACGAAGCGGC TATCGAAAAA AGCATGAGTA ACGACTTTGG TAGCTTGTTC
CGTAATGAAT CCGCTGTCGG GGTAAAAGGC GGGGCTGGCA AACCAACCAC GGTCACCATT
CGTGGTATCG GTGGTAACCG AGTGATGATG GTGAAAGACG GTGTACGCGT CAATAACCAG
TATGCCTCAC CACTGGGACC AGGCGCCGAA GGTACCGGGC GTGGACTCAC CGAAGTGCAG
AGCCTGAAGC AAGTGGAAGT CGTCAAAGCG GCGGCTTCTA CCATGTACGG CTCAGATGCC
CTCGGTGGTG TGGTAGTCAT GCGTACAAAA GATGCCAGTG ATTATCTGAT GGGTGATGAG
ACTTACCTGT CAGTCAACGG TGGCTATAGT GGTATCAATA ATGAGTACAG CGCCGGCTTT
ACGGCCGCCA ACAGCGTAGG AAATTTTGAA AATTTACTCA CCTACCAGCG CCGTGAGGGT
GAAGAGACAC AGAACTATCA GCAAGACCTG CCGGACTCAG ATTTAGTGCA GGACAGCATC
TTACTGAAAA GTAAGTACCA CTTCAATGAC CACACCTCCT TGCAGTTGAG CGTCGACTAT
CTGGAGCAGA AACTTGAACG TTGGGAGCCG ATGTTTGACG ACAGTTCAGC ATTAACGGAG
CAGATCGATA CCCGGCGCGA CACCCAGGTA CTTAACGGTG CGTTGCAACT GCGCTCAGAT
AAGCCCAGTG CGCTGCATGA TAACCTGACC GTGGTGATGT ATTACGGCGC GACTAAGCAG
AACGAAGATC GTGATTACTA TAGTTTTGAC GGCAACAAGC AGTCGACCAA TGATCGCAAC
AGAGAGTACA TCTTTGAAGA TGAGCGCCTG GGTATTAACA GCACCTTTAA TAAATACATA
GGCGAAGAGA GCTATGGCCA TAACATCACC TACGGGATGG ATCTTGAGCT GTCGAGCATG
TTGCGTCACC GCACCTACGC CGAACAAGAT AGCGGAGAAT GGCTAGTCAG CCACCCCTTT
ACCTTCGCCG ATACCGATAG CCAACGAATC GGTGTTTTTG CTCAAGATGA TATCAAACTG
CTCGACGGAA AACTGAACCT GATAGCTGGG ATCCGTTTCG ACAACTTTGA AAATACACCA
GACAAATCAA CCCTGACCTC TGAGCAAGAC CCGGCAAATT TTGATGCCAT GAGTGAAAGC
TTCTGGTCAC CCAAATTGGG ACTTATCTAT CACATAACAG ATGATGTCAG CGTCTACGGA
CAGTACACCT ATGGCTACAA GATGCCTACC CCGGATCAGA AGTGGGGAGA ATTGGTGATT
AATGAACCCG GCATGCCGAT GGAAGTATTA CTCAAGCCTA ACTATGATCT GGAATCGGAA
CAGAGCAACA CCTTCGAAGC CGGCGTTCGT GGCAGCCATA ACGATACCAG TTACGAGCTA
ACCCTGTTCT ACAGTCAGGT AAAAGATTAC ATCGACTGGC AGTTCCTGGG CATGGAGATG
TTTCCACAGA TGAACCTTCA GTACGGCTAC TTTAACCGTG AAGAGGTTAA ACTGTACGGC
TTTGAAGCCC AGGTGAATCA ATGGATAGGT GATAGCTTAG AGCTATGGGG AAACCTATCT
TACACCCATG GTGAAGATGA AAACGGTGAC TACCTTAATA GTGTCAGCCC TATGCGAGGA
ACACTTGGTG CCAACTACTA CACCGAACTT GCAGGTATGG AAGCCGATGT GGCAACGGTA
GTGCGTTTTG CCGATCAAAT GGATCGTACC ACTGACCTGG ATATATTTCC GGGTATGGAC
ACATTTAATA GCGTGTACAA CACCCCCGGT TATGCGGTGG TTGATTTAAC CTTTGGTCTG
CGGCTCAACG ATAGCTGGAA GCTAAGAACC GGTGTGTACA ATCTATTTGA TAAAGAGTAT
ATCGATTATG CCGATGTTGC CGGCCAATCG AAATACCTGC TCAATTCACT TGGCACGCCC
GATACCAACT TCACTCAACC TGGGCGCTAT TTCAATGTCA GCGTGAACTA TCAGTTCTAA
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| Protein sequence | MNKLQVSVLA LAVTAALHAQ AEEISSVSKS EQGSPPEKTE VIVISGSRME QEIQQVAGSI
LVIDEAAIEK SMSNDFGSLF RNESAVGVKG GAGKPTTVTI RGIGGNRVMM VKDGVRVNNQ
YASPLGPGAE GTGRGLTEVQ SLKQVEVVKA AASTMYGSDA LGGVVVMRTK DASDYLMGDE
TYLSVNGGYS GINNEYSAGF TAANSVGNFE NLLTYQRREG EETQNYQQDL PDSDLVQDSI
LLKSKYHFND HTSLQLSVDY LEQKLERWEP MFDDSSALTE QIDTRRDTQV LNGALQLRSD
KPSALHDNLT VVMYYGATKQ NEDRDYYSFD GNKQSTNDRN REYIFEDERL GINSTFNKYI
GEESYGHNIT YGMDLELSSM LRHRTYAEQD SGEWLVSHPF TFADTDSQRI GVFAQDDIKL
LDGKLNLIAG IRFDNFENTP DKSTLTSEQD PANFDAMSES FWSPKLGLIY HITDDVSVYG
QYTYGYKMPT PDQKWGELVI NEPGMPMEVL LKPNYDLESE QSNTFEAGVR GSHNDTSYEL
TLFYSQVKDY IDWQFLGMEM FPQMNLQYGY FNREEVKLYG FEAQVNQWIG DSLELWGNLS
YTHGEDENGD YLNSVSPMRG TLGANYYTEL AGMEADVATV VRFADQMDRT TDLDIFPGMD
TFNSVYNTPG YAVVDLTFGL RLNDSWKLRT GVYNLFDKEY IDYADVAGQS KYLLNSLGTP
DTNFTQPGRY FNVSVNYQF
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