Gene Ssed_3617 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3617 
Symbol 
ID5611827 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp4404054 
End bp4404935 
Gene Length882 bp 
Protein Length293 aa 
Translation table11 
GC content48% 
IMG OID640934570 
Productoxygen-independent coproporphyrinogen III oxidase, Fe-S oxidoreductase 
Protein accessionYP_001475349 
Protein GI157376749 
COG category[C] Energy production and conversion 
COG ID[COG1032] Fe-S oxidoreductase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGATACG AAGGTAAAAT TTATCGACCA CCACCGGAGG CAGGCGCCTA CATTTTACAG 
TGCACCGTTG GCTGCTCTTA CAACAAGTGT ACCTACTGCT CTATGTACAA AGATGTGCGC
TATCGGGTTC GTACCATAGA GGAACTTAAA GAAGATATTC AGATGGCAAA GAAAGCCTAC
GGTGCAGGAG TTAATAAAGT ATTCCTGAGC GATGGCGACG CGATTTCGCT GCCAACTGAT
ACCTTGTTGG AGATCTTATC TGAACTCTAT GGTGCTTTCC CCGAACTCAC TCACGTCAGT
ACCTACGCCG GTCCTCAGAG TACCTTGAGT AAAACCCTGG AGGAGTTAAC CCAACTAAGA
AAAGCCGGGT TAACCATGAC CTATCTGGGC GTAGAGTCGG GCTCAGATCG AGTATTAACA
GAGGTACGTA AAGGGGTCTC GGCCAAAGAG ATGCTTGAGG CAGGCAGTAA TATTGTAAAA
TCAGGAATAA AGCTGGTAGC TATGGTGATG GTCGGTCTGG GAGGCCGTGG CGAGCGCTCT
CGTATTCATG CAATTGAAAC GGCGGAGCTC ATCAATCGGA TGAAACCGTA CCTTTTGGGT
ACGCTGACCA CTGTTCCGAT GCCGGGCACC GTTCTACACA GACAAATGAG CAAGGGAGAT
TTTAAACTGC TCGACCCTTA TGAGGTGCTG GAGGAGATGA AGGTATTACT TGAACATCTC
ACACTGCCGG ATCTCTATAT CGATGGCAGG CATGCGTCCA ACCTGATGCC GATAAAAGGC
AGGCTCACAG AGATAGGCCC TGACGTAATA AGCGCGATAG ATAAACATCT AAAGCACAGA
GATAACAATT TAATTGGCCA GGCATATATA GGCCAATTTT AA
 
Protein sequence
MRYEGKIYRP PPEAGAYILQ CTVGCSYNKC TYCSMYKDVR YRVRTIEELK EDIQMAKKAY 
GAGVNKVFLS DGDAISLPTD TLLEILSELY GAFPELTHVS TYAGPQSTLS KTLEELTQLR
KAGLTMTYLG VESGSDRVLT EVRKGVSAKE MLEAGSNIVK SGIKLVAMVM VGLGGRGERS
RIHAIETAEL INRMKPYLLG TLTTVPMPGT VLHRQMSKGD FKLLDPYEVL EEMKVLLEHL
TLPDLYIDGR HASNLMPIKG RLTEIGPDVI SAIDKHLKHR DNNLIGQAYI GQF