| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3588 |
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| Symbol | |
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| ID | 5613523 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4374670 |
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| End bp | 4376907 |
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| Gene Length | 2238 bp |
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| Protein Length | 745 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640934541 |
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| Product | decaheme cytochrome c |
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| Protein accession | YP_001475320 |
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| Protein GI | 157376720 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR03507] decaheme c-type cytochrome, OmcA/MtrC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTATAA CTAAAAGAAA AACGTCACTC GCACTATTAA TTGCATCTGC AATGATGGTC
ACAGGTTGTG GTGATGATGG CAAAGATGGG CAAAACGGTG CAGATGGTTC AAATGGTGAC
AATGGCGAGA ATGGTAAGCC CGGTACTTCC GGTCTTCATA TCGACATGGC CGCCGAAGCG
ACTGCAAATA TTACTAACGC CGCTTATGCA GACGGTATCA TTACCGTCGA TTTCGATCTG
GCAAATAAAG AGGGGGTCGG CCTATTTGGA CTGACCGGTG AGAATGAGTT CCATGATTTC
CGCTTCTCAT TAGCTCAACT GCAAACTAAC ACAGGTTCTG AGCTTAAACA GTGGATGTCA
CTGCTTAACG AAACGACCAA TGATGCAGGA ACGACATTCG AGCAAGGTTT TGAGAAATTA
AATGATTGCC CCGAGTGTTT AGTCGATCAT GATGATGGTA CCTACACCTA TACATTCAAC
ACTAATCTAA CGACCGCTGA AGACGTTGCA GGTATCGTGT TTGATGCCGG CCTGACTCAG
CGTATCGCCA TTGAGATGCA GTTCGAGTAT GACTCGGGTC ATGAGCTGGC GGAAAATGCT
CACTATGACT GGATCCCTTC GACCAATGCA CAAGAGGGTA TAGCGACCCG TGACCTGGTT
ACATTGGAAA CCTGTTATAC CTGTCACCAG CCAGATAGCT TAAAGGCCCA CGGTGGACGT
CGTCTGGACC TGGAAAACTG TCAGTCTTGT CATAATGGTG TTGTCAGCGA TCCTAATGAT
GTCTCTGTTG AACTTGGACA TATGGTGCAC GCTATCCATA TGGGTCCAAA CCGTGAAGGC
AAAGATGCTG AAGGTAATGT GGTTAAAATG CCATACACCA TCGCTGGTTA CGGCGGCGAT
CATGCCTTCG ATTACCCTGC CTTTCCAACT AAGCCATTTA TGGACTGTGC CGCTTGTCAC
GTTGAAGATG AGAACTTAGC GGATAAAGAT CTCTGGCTGG CCAATGCTAA CGCTAACGCT
TGTACGGGTT GTCATACTGA CTCGCCAGCG CAGCATAAGT CGGATAAGAA CCCTGATCTG
ACTTGTACTG ACTGTCACAG TGCAGCGGTT CATACAGATC ACAAGAAGCC ATATGATGCA
GCACAAGACT ACAGTGTTGA AGTTAGCAAT GTTGTCTTAA ACGTTGACGG TCTACTCGAG
TTTGACGTTA AGGTTATGGA CAGTGCTGGT GCACTGGTCT CTGAAGATGA GATATATAAG
CAAGGCTACA GCAACCCATA CATGGTTGTG AGCTGGGATA TCGAAGATGA TTATCCTGAG
CAGCTTATCT CTTCAGAAAC AGATGTTCTG ACTGTTGGAA CAACCTACGA TCATAGACGT
TTCAGCTTGA AGGGTGATGG TTCAACTACC TACGATGCTA CAACTAAAGT GTTCCATGTT
ACCACTGAGA AAGTGAAAGG TAGCAAGACA TATCGCACTG ATGTACCTGC AGATATCCTA
ACTGACAGAT CTTTAGAAAT CCTGCCATTA GTTAAAGTCT GTTTCACAGA AGCAACTAAC
GTACGTACAG ATTGTACTGC AGATGATGCA TATCCTGCAT ACGTTCAGAC TGAACCATAC
CGTGTATACC AGATGGGTGC TTACGGTCCT GAGATGCGTC GCTCTATCAT CGATGAAGCT
ACTTGCATGG GTTGTCATAG CCAAGAGCTA TATCATGATG CTAACGGTGT GAACTGTATC
GCCTGTCATA CTAATGATAA GAAGTTGGGT GCTGTTGAAG TCGGCTATGC GCCTGTACCT
TGGGGCGAAA TGAAGTCTTC AAGCTTTATG TATAAGGCAC ACAAGGCTGA AGGACATGAT
AATGGCCATG GCGGTAGCGG TACTATCCTG AAAACTGACT GTATGACTTG TCATGCTGAA
GTCGATGGCT GGAGTGGTAA GGACTACGGC TTCGAATTAG GCCGTAACGC TGGCTCTGCT
CATACTGTAC CTAGCTTTAT CGCTAGCGAA GGTAATGACC CGGATGTTAA CCCTGTATTG
TCTTGGTACG CATCTCCTGA TGCGGCTGCA TGTATGAGTT GTCATCAGAA GTACCTGTCT
GATGCAGCTA TGAGCCACTT CGAGAGCAAT GGCGCATACT TTGGCCCAGA TAAGCAGATG
GCTAAAGATG CTAAAGAAGC TTGTGCAACC TGTCACAGCC CAGAGAAGAT CATGGAGCAT
CACGGTCATT CTCTATAA
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| Protein sequence | MIITKRKTSL ALLIASAMMV TGCGDDGKDG QNGADGSNGD NGENGKPGTS GLHIDMAAEA
TANITNAAYA DGIITVDFDL ANKEGVGLFG LTGENEFHDF RFSLAQLQTN TGSELKQWMS
LLNETTNDAG TTFEQGFEKL NDCPECLVDH DDGTYTYTFN TNLTTAEDVA GIVFDAGLTQ
RIAIEMQFEY DSGHELAENA HYDWIPSTNA QEGIATRDLV TLETCYTCHQ PDSLKAHGGR
RLDLENCQSC HNGVVSDPND VSVELGHMVH AIHMGPNREG KDAEGNVVKM PYTIAGYGGD
HAFDYPAFPT KPFMDCAACH VEDENLADKD LWLANANANA CTGCHTDSPA QHKSDKNPDL
TCTDCHSAAV HTDHKKPYDA AQDYSVEVSN VVLNVDGLLE FDVKVMDSAG ALVSEDEIYK
QGYSNPYMVV SWDIEDDYPE QLISSETDVL TVGTTYDHRR FSLKGDGSTT YDATTKVFHV
TTEKVKGSKT YRTDVPADIL TDRSLEILPL VKVCFTEATN VRTDCTADDA YPAYVQTEPY
RVYQMGAYGP EMRRSIIDEA TCMGCHSQEL YHDANGVNCI ACHTNDKKLG AVEVGYAPVP
WGEMKSSSFM YKAHKAEGHD NGHGGSGTIL KTDCMTCHAE VDGWSGKDYG FELGRNAGSA
HTVPSFIASE GNDPDVNPVL SWYASPDAAA CMSCHQKYLS DAAMSHFESN GAYFGPDKQM
AKDAKEACAT CHSPEKIMEH HGHSL
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