| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3559 |
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| Symbol | |
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| ID | 5611716 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4338313 |
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| End bp | 4340310 |
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| Gene Length | 1998 bp |
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| Protein Length | 665 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640934512 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001475291 |
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| Protein GI | 157376691 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00145171 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGTACTC AAGCTAGACA ATCAAACAAA TTATCAAAAT TAGCCATGCT AATCGGCAGT
GCTCTGGCTC TGTCTGCGTC GTCGTCCGTG ACGTTTGCGG CCGATTCATC TCAAACAGAT
TCTGGTGTGA CTAACACAGT CGATGAGGTT ATTACCGTTA TCGGTCGCAG TGAAAATACG
CCACTGAATA TTGCCGCCAA TGTGAACATT ATCGATGCGG CGGCCATCGA GATGAGCGGT
GCGACGACAC TGACCGAAGT ACTGCGTGGC CAGAGTGGCA TACAGATCTC GGACTCGAAT
TCCGGCGCCG TTTTCGCTAT GCGTGGTTTC AGTGCTGGTC AGGCCGCAAA CAACACCCTC
TTGCTTGTCG ATGGACGTCG TTTGAATAAT ATCGATATCG CGGCGCCAAG CATCAATGCC
ATCCCACTCA ATCAGATAGA GCGCGTCGAG ATACTGTCGG GCAGTGCCGG TGTACTCTAC
GGCGATCAGG CGGTGGGCGG TGTGATTAAT ATCATCACCA AGGCGCCAAA CAGCGCGGGC
GGCGGCATTC AAGTGTCTGG AGGCAGCTTC GATACCTATG AAGGTAAAGG TGATATCTCG
GGTGCCATCA GTAATACCTG GCGTTACTAC GCTGCGGCCA GCTATAACCA AGGTGATAAC
TATCGTGAGC ACAATGCCAA CAAGACCTCG TCTGTATTAG GTCGACTTCA ATATCAAACC
GAGTCGGATA ACTTCTTCGT TGAGACCAGC TACTACGATA ACGATCGTGA GATGGCGGGG
TCATTGACCA AAGAGCAGAT TAAAGATAAT CCACGTCAGG TTAATCCATT TAATAAAGAT
GACTATCAGC ATGAGATGAC AACGGCTATT CGCACGGGTT ATCAGCATCA ACTCACCGAT
GCCTGGTCGT TAGGTGCGGA TATCAACTAT ACCGATACTC AGGTGACCGG GATCAGTTGG
GGTTCGCCAA GTAAGAATAA ACGCTCTTTC CTCGAGTTCA CTCCGAAAGC GGTAGCGAAT
ATTACGACAG AAAAAGGCGA CTTGAATATC GTTACCGGTA TCGACCTGAG CCGGGGGGAA
TCTGAGTTTG ATTGGGGACG AAGTAATGTG CAGAAGGTGG CTAGCGCCTA TGCTCAAGCC
AGTGTGCCGT TAACTCAAAG CCTGAGTTAT GTAGTGGGTG GTCGTTACTC CGAGGTGACT
GACGATCTTG TCGATGGTGA CGTTTACCCT CAGGGCATAG AGCTTGATCA GGATGCGCAT
GCGTTCGAGT TGGGCTTGAA CTATCGTCCG GGCACTTCAC ACAGATTCTA TCTTCGCGCC
GATGACAACT TCCGTTTCGC TAAGGTCGAT GAGCAGGCTT ATACCTCACC GGGTGTGATG
GGTCTTAAGC CGCAGACGGG TCGTTCATAT GAGGCGGGTT GGGATTGGTC TCCTGCGAGC
CACACATTGC GCTTAAGCCT GTATCGTTTG GACTTAGAGG ATGAGATTGT ATTTGACCCG
AGTGCTGAGA CCCCTGATGG TGGCAAATTT CCTGGTGCCA ACGTGAACGC CGATGCATCG
CGCCGTTATG GCTCGAGTCT GGATTGGGAC TGGCAGATCA CTAAGATGGT GCAACTGGGT
CTGGAGTACA ACTATATCGA CGCCGAGTTT ACCGAAGGAG TAAATGAAGG CAATCAGCTC
TCCTGGGTCG CCGAGCACTC CGGCCGTGGT TACTTCAGTA TAGATGCTAA CCAGAACTGG
CAGGTGTTTA CCGAGCTGTT ATACACCGGA GAGCGTTTCA TCGAAGGCGA TAACGGTAAT
GCTGACCCTA AGCTGGAGTC ATACTGGTTA ACTAATTTAG CGATTAACTA CACCCGTGAT
GCCTGGCTTG CCAGCTTCCG CGTCGATAAC CTGTTCGATG AGCAATATGT CAGTGCCGGT
TACTACAGTA GTTGGGGGAA TGGCTATTAT GCGGGTACCG GACGTGCCCT ACGTCTGACG
GCAAGCTATC GCTTTTAA
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| Protein sequence | MGTQARQSNK LSKLAMLIGS ALALSASSSV TFAADSSQTD SGVTNTVDEV ITVIGRSENT
PLNIAANVNI IDAAAIEMSG ATTLTEVLRG QSGIQISDSN SGAVFAMRGF SAGQAANNTL
LLVDGRRLNN IDIAAPSINA IPLNQIERVE ILSGSAGVLY GDQAVGGVIN IITKAPNSAG
GGIQVSGGSF DTYEGKGDIS GAISNTWRYY AAASYNQGDN YREHNANKTS SVLGRLQYQT
ESDNFFVETS YYDNDREMAG SLTKEQIKDN PRQVNPFNKD DYQHEMTTAI RTGYQHQLTD
AWSLGADINY TDTQVTGISW GSPSKNKRSF LEFTPKAVAN ITTEKGDLNI VTGIDLSRGE
SEFDWGRSNV QKVASAYAQA SVPLTQSLSY VVGGRYSEVT DDLVDGDVYP QGIELDQDAH
AFELGLNYRP GTSHRFYLRA DDNFRFAKVD EQAYTSPGVM GLKPQTGRSY EAGWDWSPAS
HTLRLSLYRL DLEDEIVFDP SAETPDGGKF PGANVNADAS RRYGSSLDWD WQITKMVQLG
LEYNYIDAEF TEGVNEGNQL SWVAEHSGRG YFSIDANQNW QVFTELLYTG ERFIEGDNGN
ADPKLESYWL TNLAINYTRD AWLASFRVDN LFDEQYVSAG YYSSWGNGYY AGTGRALRLT
ASYRF
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