Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3509 |
Symbol | |
ID | 5612280 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 4275510 |
End bp | 4277594 |
Gene Length | 2085 bp |
Protein Length | 694 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640934462 |
Product | endothelin-converting protein 1 |
Protein accession | YP_001475241 |
Protein GI | 157376641 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG3590] Predicted metalloendopeptidase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000108366 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAGAAAG TACTCGTTGG GGGACTCTGT GCCTCACTGA TTGTAGGTCT TAGTGCCTGC AATAATAAAG CAGCCGAAGT TAAAGCACCT GAAATCACTA AAACAGAGAC TGCTGCAGCG GTATCAAAGG CGCTGGGTTC AGGTATCGAT TTTGCTAATT TTGATAAGTC AGTTCGTCCG CAAGACGACT TTTACAACTA CGTAAATGGC ACCTGGATTA AGAATACCGA GATCCCGAGC GACAGAACCA GCGCGGGTGC ATTCTATGAT CTTCGTGAAA AATCCCGTGA TGATGTAAAA GCCATTATCG AAGAGGTAGC CGCCACCCCT AATCTAGCAG CGGGTAGTGA CGAGCAAAAA GTTGCCGACC TTTATCGCTC ATTTATGGAT ATCGACACGC TTAATAAGCT AGGGACTGCG CCAATTCAGG GCGAATTAGA CAAGATTGCC GCACTAAAAT CGAAAGATGA ACTGGTCAAA TATTTTGCTC ATAGTCAGCT AATTGGTGCT GGTACGCCAC TCGCTTTCTA TATCGATGTT GATGCAAAAG ATTCAAGCCG CTACGCCACA CACATCTGGC AGTATGGCCT AAGCCTTCCG GAGAAAGATT ACTATTTCAA TGAAGGTGAG CGTTTCGTCA ATATTCGTAA GGCTTACATC GAGCACATCG AAAAGATGTT CACGTTAGCA GGTCTTGCTA ACCCAAAAGC CAGTGCTGAG AAGGTGTTAG CCCTCGAAAC TGCAATAGCC AGCAGACATT GGGATGTCGT TGAGACCCGA GATAGCACAA AAACGTACAA CCTGATGCAA GTTAAAGATC TCCCGACTCT GGCACCAGAC ATCGATTGGA CTGGATTCTT GACGACTTTA GGTGTCGAGA AGCAATCTGA TATCATCATC AATCAGCCAA GTTTCATCGA AGGCTTCAAT GAAGTGCTTA AGGCGAACGA GCTAACCACA TGGCAAACCT ACATGCAGTG GCAGCTGCTC ACGAGTTTTG CAGGCCAGTT AACCGCCGAT CTTGATAGAG AAAACTTTGA GTTTTTCTCC AAAACATTAA ATGGTCAAGC CGAGCAGCAG CCTCGCTGGA AACGCGGCGT GAGCACGGTT AACTCTGTGC TTGGCGAAGT CGTGGGTAAA GTCTACGTTA AGCGTCATTT CACGCCTGAG GCCAAAGAGC GTATGCAGGT TCTGGTTGAA AATCTACGTG GTGCTTACGG CGACAGCATA GACAACCTGG ATTGGATGGG CGCCGACACT AAAGTAGCAG CAAAAGATAA GCTGGCTAAA TTCGATCCTA AGATTGGTTA CCCGGATAGA TGGGAAGATT ACGATAAGCT GACGATCAAA GCTGACGAGC TCGTCGGCAA CGGTATTCGT GCGAGTCTAC TCGGTCATGA CAAAGAGTTG GAAAAACTTG CCGGCCCAAT CCGTAAATGG GAATGGCATA TGACCCCACA AACGGTCAAC GCCTATTACA ACCCAACCAT GAATGAGATC GTATTCCCGG CAGCAATCCT TCAAGCTCCA TTCTTTAATA TGGAAGCCGA TGATGCCGTA AACTATGGTG GTATTGGTGC CGTTATTGGT CATGAAATGG GCCATGGTTT CGATGATCAG GGGGCTAAGT TTGATGGTGA AGGCAACATG CGTGACTGGT GGACAGAACA AGATCTGTCA GCATTTGCCG CGAAAGGGAG CGCCTTAGTC ACACAATATA ATGGTTATGC CGTATTTGAC GATCTCAACG TTAATGGTGA GCTGACCCTT GGTGAGAACA TCGGTGACCT TTCTGGTGTG ACCATAGCGT ATAAAGCCTA TAAAAAGTCA CTTAGCGGAA AAGAGGCCCC TGTTATCGAC GGTTTAACCG GCGATGAGCG CTTCTTCATC GGATTTACTC AAATCTGGCG CGCGAAGATT AAAGAGGAAT CTATGCGTAA CCGTGTAGCA ACCGATCCGC ATTCTCCGGC TAAGTTCCGC TCATTGGGTG CCCTGTCTAA CATGCCTCAG TTCTATACCA CTTTCGACGT GAAAGAGGGC GATGCCATGT ATCTCGCCCC CGAAAAGCGT GTAAAGATCT GGTAA
|
Protein sequence | MKKVLVGGLC ASLIVGLSAC NNKAAEVKAP EITKTETAAA VSKALGSGID FANFDKSVRP QDDFYNYVNG TWIKNTEIPS DRTSAGAFYD LREKSRDDVK AIIEEVAATP NLAAGSDEQK VADLYRSFMD IDTLNKLGTA PIQGELDKIA ALKSKDELVK YFAHSQLIGA GTPLAFYIDV DAKDSSRYAT HIWQYGLSLP EKDYYFNEGE RFVNIRKAYI EHIEKMFTLA GLANPKASAE KVLALETAIA SRHWDVVETR DSTKTYNLMQ VKDLPTLAPD IDWTGFLTTL GVEKQSDIII NQPSFIEGFN EVLKANELTT WQTYMQWQLL TSFAGQLTAD LDRENFEFFS KTLNGQAEQQ PRWKRGVSTV NSVLGEVVGK VYVKRHFTPE AKERMQVLVE NLRGAYGDSI DNLDWMGADT KVAAKDKLAK FDPKIGYPDR WEDYDKLTIK ADELVGNGIR ASLLGHDKEL EKLAGPIRKW EWHMTPQTVN AYYNPTMNEI VFPAAILQAP FFNMEADDAV NYGGIGAVIG HEMGHGFDDQ GAKFDGEGNM RDWWTEQDLS AFAAKGSALV TQYNGYAVFD DLNVNGELTL GENIGDLSGV TIAYKAYKKS LSGKEAPVID GLTGDERFFI GFTQIWRAKI KEESMRNRVA TDPHSPAKFR SLGALSNMPQ FYTTFDVKEG DAMYLAPEKR VKIW
|
| |