| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3500 |
|---|
| Symbol | |
|---|
| ID | 5612674 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 4265509 |
|---|
| End bp | 4266357 |
|---|
| Gene Length | 849 bp |
|---|
| Protein Length | 282 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 640934452 |
|---|
| Product | putative lipoprotein |
|---|
| Protein accession | YP_001475232 |
|---|
| Protein GI | 157376632 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4105] DNA uptake lipoprotein |
|---|
| TIGRFAM ID | [TIGR03302] outer membrane assembly lipoprotein YfiO |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.538329 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.104319 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCTATCTG TTACAATCGA ATTGTTTCTA TTTTATATTG AAATGGAAAA ATTCTTAACC
ATAACTTTAA AAGAATCGAA CTTAAGTATG CATAAATTCG CTAAAGGTGC CGTAGTCGGC
CTATTTTCAC TGGCCATAGC GGCCTGTAGT AGTAGCCCAG AAGAAGATCT AAAGGTAAAG
AAATCCTCAC CAGATATACT TTACTCTCAA GCAAGAACGT CCATGGAGCT TGGAAACTTC
AGTAAAGCGG TACGCTCATT AGAAGCATTA GACTCTCGCT ATCCTTTTGG TCCGCATAAA
ACTCAAGTAC AACTCGACCT CATCTTTGCC TATTATAAAC TAGATGACGC AGCATCGGGT
ATCGCTAATA TCGATCGTTT TATCAGGCTG AACCCAACTC ATAAAGATAT TGACTATGTT
TACTACATGC GTGGACTCGT CAATATGCAA TCTGATAACT ATATGTTCCA CGATATGTTA
GATATCGACA GAACAGACAG AGATCCCAAA GTAGCACAAG ATGCCTTTAA TGATTTCGAC
CGTCTAATCA AGTCATACCC AAAGAGTAAA TACGCACCAG ATGCAGCTAA ACGCATGCTT
TACTTGAAAA ACCGTTTAGC AAAATACTCT ATCAACGTAG CTGAATACTA TATAAAAATG
AATGCTTGGA GTGCGGCTTC AACGAGAGCA CAATCGGTCA TGGAAACGTA TCCGGGCACA
ACATCGACAG AGCGAGCATT AGAGATTATG GCTGAGGCTT ATGGTGAATT AGGCCAAGAA
AAACTCAGAG AAAATGTCTT GTCGGTAATG AAAATTAACT TCCCAAATAA TAAGATGTTG
TCTCGCTAA
|
|---|
| Protein sequence | MLSVTIELFL FYIEMEKFLT ITLKESNLSM HKFAKGAVVG LFSLAIAACS SSPEEDLKVK
KSSPDILYSQ ARTSMELGNF SKAVRSLEAL DSRYPFGPHK TQVQLDLIFA YYKLDDAASG
IANIDRFIRL NPTHKDIDYV YYMRGLVNMQ SDNYMFHDML DIDRTDRDPK VAQDAFNDFD
RLIKSYPKSK YAPDAAKRML YLKNRLAKYS INVAEYYIKM NAWSAASTRA QSVMETYPGT
TSTERALEIM AEAYGELGQE KLRENVLSVM KINFPNNKML SR
|
|---|
| |