| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3491 |
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| Symbol | lipB |
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| ID | 5613049 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4249364 |
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| End bp | 4250023 |
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| Gene Length | 660 bp |
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| Protein Length | 219 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640934439 |
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| Product | lipoate-protein ligase B |
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| Protein accession | YP_001475223 |
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| Protein GI | 157376623 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0321] Lipoate-protein ligase B |
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| TIGRFAM ID | [TIGR00214] lipoate-protein ligase B |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0000205489 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | TTGTCAGAAA GCACTTTACA CGTCAGATAT CTTGGTAAAC AAGACTACGA ATCGGTATGG
CATGCGATGC AAGACTATAC CGATAATCGA GACGCCTCTA GTCCGGATCA ACTTTGGATC
GTTGAACACC CACCTGTTTT CACCCAAGGA CAAGCAGGAA AAAGTGAACA CATTTTAAAT
CCGGGTGATA TCCCAGTCAT TCAGGTTGAT CGTGGCGGAC AAGTGACTTA TCACGGTCCC
GGTCAGCTGG TTGCTTACCC GCTAATCAAT ATCAAAAGGC TAAAAATTGG TGTCAGACAG
TTGGTCACCG ATATTGAAAA CAGCATTGTG CAGATGCTAG AAGGCTATCA GGTCAAAGCT
TATGCAAAAG CCGACGCGCC AGGCGTGTAT GTTGATGAGC GTAAAGTTGC ATCATTAGGA
CTTCGAATAC GTAAAGGTTG CTCCTTTCAC GGACTAGCCC TTAATGTCGA TATGGATATG
AGCCCATTTC AGCGTATCAA CCCATGTGGT TACGCAGGCT TGGAGATGGT GCAGTGCAAA
CAGTTAGGTG GCCCTCAAAC AGTTGAAGAA GCTGGCGAAC GGCTAGTTAA AACTTTTAGC
CACAATTTAG GTTATCAGAA TCTAATTCAC CATCAAGGAT TATCAGAGTC ATATGAGTAG
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| Protein sequence | MSESTLHVRY LGKQDYESVW HAMQDYTDNR DASSPDQLWI VEHPPVFTQG QAGKSEHILN
PGDIPVIQVD RGGQVTYHGP GQLVAYPLIN IKRLKIGVRQ LVTDIENSIV QMLEGYQVKA
YAKADAPGVY VDERKVASLG LRIRKGCSFH GLALNVDMDM SPFQRINPCG YAGLEMVQCK
QLGGPQTVEE AGERLVKTFS HNLGYQNLIH HQGLSESYE
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