| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3471 |
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| Symbol | |
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| ID | 5613461 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4226571 |
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| End bp | 4227995 |
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| Gene Length | 1425 bp |
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| Protein Length | 474 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640934419 |
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| Product | (dimethylallyl)adenosine tRNA methylthiotransferase |
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| Protein accession | YP_001475203 |
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| Protein GI | 157376603 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0621] 2-methylthioadenine synthetase |
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| TIGRFAM ID | [TIGR00089] RNA modification enzyme, MiaB family
[TIGR01574] tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000111434 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.160126 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTAAAA AACTCCATAT TAAAACCTGG GGCTGTCAGA TGAATGAGTA TGACTCATCT
AAGATGGCTG ACCTGATGGA CGAGTACGAA GGCTATACCT TGACAGAAGA GGCGAGTGAA
GCAGATGTAC TGCTGCTGAA TACTTGTTCG ATTCGTGAAA AAGCCCAAGA AAAAGTGTTC
CATCAACTTG GACGCTGGAA AAAACTGAAA GAAAAAAATC CCGATTTAAT CATCGGGGTT
GGTGGATGTG TTGCGTCCCA AGAGGGCAAA GTTATCAAGG AGCGTGCTCA GTGCGTCGAT
CTGATCTTTG GTCCACAAAC ATTGCATCGT CTTCCAGAGA TGATCGACCA GATCAGAGAT
GGCGGAAAGG CAGTGATCGA TATCAGTTTC CCTGAAATTG AAAAGTTCGA CAAACTCCCC
GAACCTCGCG CCGATGGTCC AAGTGCGTTT GTTTCAATTA TGGAAGGTTG CAGTAAATAT
TGCTCTTTCT GTGTTGTGCC TTATACGCGT GGCGAAGAGG TCAGTCGCCC TCTCGATGAT
ATTATCCTGG AGATAGCTCA ACTCGCTGAC CAAGGCGTTC GCGAAGTTAA CCTGTTAGGG
CAAAACGTTA ACGCTTATCG TGGTGCGACT CATGATGATG AGATCTGCAC CTTTGCAGAG
CTACTTCGTT ACGTTGCTGC CATCGATGGA ATCGATAGAC TCAGGTTTAC CACGAGTCAC
CCTATCGAAT TCACTCAAGA TATTATCGAC GTTTACGAGG ATACACCTGA ACTGGTCAGC
TTCCTTCACC TGCCGGTACA ATCTGGATCA GATCGCATTC TGACTCAGAT GAAACGTGGC
CATATGGCTA TCGAATATAA ATCAATTATT CGACGCCTCA GAAAAGCACG TCCGGATATC
CAGATAAGCT CTGACTTTAT CATTGGTTTT CCGGGTGAGT CTAAACAGGA CTTCGCCGAT
ACTATGAAGC TCATTGAGGA TGTGCAGTTC GATCACAGCT TCAGCTTCAT CTACAGTGCC
CGTCCAGGCA CGCCCGCAGC CGACCTCCCG GATGATGTGA CCTTAGCTGA AAAGAAAGAA
CGTTTGGCTA TCTTGCAAGA CCGGATTACT CAGCAAGCCA TGCGTTATAG CCGTCAAATG
CTAGGAACAG TTCAACGAAT TTTAGTCGAA GGGCCATCGG TGAAGAATCC GATGGAGCTT
AGAGGCCGCA CAGAAACCAG CCGAGTAGTG AACTTCGAAG CCGATCCAAA ACATATAGGT
AGCTTCGTCG ATGTCGAAAT TGTTGATGTT TACACCAACT CATTGCGTGG CACCTTTGTC
CGCGGGGAAG ATGAGATGGA TCTGCGCCGC TCACTCACAC CATCTGACAT TCTTGCTAAA
CATAAGAAAG ACGATGATTT AGGTGTCACT CAATACATCC CATAA
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| Protein sequence | MSKKLHIKTW GCQMNEYDSS KMADLMDEYE GYTLTEEASE ADVLLLNTCS IREKAQEKVF
HQLGRWKKLK EKNPDLIIGV GGCVASQEGK VIKERAQCVD LIFGPQTLHR LPEMIDQIRD
GGKAVIDISF PEIEKFDKLP EPRADGPSAF VSIMEGCSKY CSFCVVPYTR GEEVSRPLDD
IILEIAQLAD QGVREVNLLG QNVNAYRGAT HDDEICTFAE LLRYVAAIDG IDRLRFTTSH
PIEFTQDIID VYEDTPELVS FLHLPVQSGS DRILTQMKRG HMAIEYKSII RRLRKARPDI
QISSDFIIGF PGESKQDFAD TMKLIEDVQF DHSFSFIYSA RPGTPAADLP DDVTLAEKKE
RLAILQDRIT QQAMRYSRQM LGTVQRILVE GPSVKNPMEL RGRTETSRVV NFEADPKHIG
SFVDVEIVDV YTNSLRGTFV RGEDEMDLRR SLTPSDILAK HKKDDDLGVT QYIP
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