| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3442 |
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| Symbol | |
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| ID | 5609907 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4191685 |
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| End bp | 4193121 |
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| Gene Length | 1437 bp |
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| Protein Length | 478 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640934382 |
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| Product | major facilitator transporter |
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| Protein accession | YP_001475174 |
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| Protein GI | 157376574 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR00901] AmpG-related permease |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.141995 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCACCAG CGTTAGGCTC AAATTATTCC CGCATGAAAG ATGCGCTCTC CATATACTGT
CATAAGCGAG TCTTGGTTCT GTTATTTCTT GGTTTTTCGG CAGGCTTACC CTTAATGCTG
GTTTTTTCGA CCCTCTCATT CTGGCTTAGA GAGGCGGGCA TCGACAGAAC CGCAATAGGT
TATTTCAGCT GGATAGCCCT CGCCTATGGC TTCAAATGGG CCTGGTCACC TCTGGTCGAT
AGACTCTCGT TACCTATTTT GACTCGCTTA CTCGGACGGC GACGAGGATG GATGCTATTT
GCACAGATGC TGCTCGTCGC AGCCATTTTA GGCATGTCTT TTAGCGATCC GCTGCAAGAT
CTGGAACGCC TTGCCCTGTT TGCCTTAATG GTCGCCTTTG CCTCGGCCAC ACAAGATATC
GTTATCGATG CTTTTCGTAT CGAATCCGCT CCGGAGAAGA TGCAGGCTGC ATTAGCGGCC
GCCTATCAAG TTGGTTATCG TAGTGCCATG ATTTTCGCCA CTGCAGGGGC CTTGACGATT
GCCGCCTGGG TTGACCCGGG GAATAACGAA TACAACCTAG TCTCCTGGCA GACGGCTTAC
CTCATCATGG CCGGACTCAT GTCGGTAGGT ATTCTCACCA CTCTCTTAAG CAAAGAGCCT
GAAGTCGAGA ATAAACAAGC CGATGAGCTG GAGCAAAAGC TAAAACAGGA TCTGAGCCTT
CGTTACCCTA AACCTGTGGC TGGTACGCTA TCTTGGTTAT ATACCGCCAG TGTATTGCCT
TTCATGGACT TCTTTAAACG TTATGGTCGC AACGCCATAT TGATCTTACT GCTCATCTCC
TGTTATCGCA TATCTGATAT CGTCATGGGG ATCATGGCCA ATGTCTTTTA CGTCGACATG
GGTTTTGCCA AAGCGGAAAT TGCCGCCATC AGCAAGATTT ATGGCCTGAT TATGACCTTA
GTCGGGGCTG GATTTGGTGG CGTGCTGCTG GCTCGCTACG GTACGATGAA GATACTCTTT
GTCGGTGCCC TGCTTGTCGC CGTCACGAAC CTATTGTTTG CCTACCAAGC GGTGGTGGGA
TACAACGTCC CCCTGTTAAC GGTCGTCATC TCCATCGATA ACTTCAGTGC AGGTATCGCA
ACTGCGGCCT TTATTGCCTA CCTTTCGAGT CTGACCAGCA GTGGCTACAG TGCCACGCAA
TACGCGCTAC TCTCCTCTAT AATGTTACTT TTCCCTAAAT TTATCGCGGG CTTCTCGGGT
GCCTACGTCG ATGCCTACGG TTATGTGAAC TTCTTCATTG GCGCCAGTAT TATCGGCTTA
CCCGTTCTAT GGTTAGTGCT CTTGGTAGAC AGGCGAACGC GACATGATGA GAGATTAAAG
CAGGAGCTAC AAACAAAAAA TGACGAGTCC CATAGCTCGG CCGAGCGGCA GACTTAA
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| Protein sequence | MSPALGSNYS RMKDALSIYC HKRVLVLLFL GFSAGLPLML VFSTLSFWLR EAGIDRTAIG
YFSWIALAYG FKWAWSPLVD RLSLPILTRL LGRRRGWMLF AQMLLVAAIL GMSFSDPLQD
LERLALFALM VAFASATQDI VIDAFRIESA PEKMQAALAA AYQVGYRSAM IFATAGALTI
AAWVDPGNNE YNLVSWQTAY LIMAGLMSVG ILTTLLSKEP EVENKQADEL EQKLKQDLSL
RYPKPVAGTL SWLYTASVLP FMDFFKRYGR NAILILLLIS CYRISDIVMG IMANVFYVDM
GFAKAEIAAI SKIYGLIMTL VGAGFGGVLL ARYGTMKILF VGALLVAVTN LLFAYQAVVG
YNVPLLTVVI SIDNFSAGIA TAAFIAYLSS LTSSGYSATQ YALLSSIMLL FPKFIAGFSG
AYVDAYGYVN FFIGASIIGL PVLWLVLLVD RRTRHDERLK QELQTKNDES HSSAERQT
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