| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3416 |
|---|
| Symbol | |
|---|
| ID | 5610753 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 4164945 |
|---|
| End bp | 4166063 |
|---|
| Gene Length | 1119 bp |
|---|
| Protein Length | 372 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640934356 |
|---|
| Product | gamma-glutamyl kinase |
|---|
| Protein accession | YP_001475148 |
|---|
| Protein GI | 157376548 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0263] Glutamate 5-kinase |
|---|
| TIGRFAM ID | [TIGR01027] glutamate 5-kinase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.181887 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACTTAA GTGAGATTGG TTACCGCCGC GTAGTGGTAA AATTGGGAAC AAGTGTACTG
ACATCCGGCA GTCGACAGTT GGATAAGGCG CATATGGTTG AGTTGGCGAG GCAGATGGCA
GCGTTAATGA AGGCCGGAGT AGAGGTCGTA CTGTGTACAT CGGGGGCAAT CGCCGCCGGC
CGTGAACATC TGGGCTACCC CGAACTCCCC GATACCGTAG CCAATAAACA GCTCCTTGCC
GCTGTGGGGC AGAGCCAACT CATTTTAGCC TGGGCACAAC TGTTCAGTAT TTATGGCCTG
CATGTGGGTC AACTGCTATT AACCCGGGCC GATCTTCATG ACAGAGAGCG CTACCTGAAT
GCGCGAGACT CTCTCAATGC GCTGTTGGCT CAGGGCATCA TCCCTATCAT CAATGAAAAT
GATGCCGTCG CCACCAATGA GATAAAAGTC GGTGATAACG ATAACCTTTC TGCCCGAGCC
GCATTGCTCT GTGATGCAGA CCTGCTGATC CTGTTAACCG ACCAGAGGGG ACTTTTCGAT
GCCGATCCTC GCTCGAACCC TGATGCAAAA CTCATTAAGC AAGTGGTCAA TATCGACGAC
AGTCTACGCC TCCTCGCCGG TGGCGCCGTC TCAGGTCTGG GAACCGGAGG CATGGCAACT
AAGCTAGAGG CGGCTGATAT TGCGAGGCGT GCCGGTGTCG AAGTGATTAT TGCATCCGGG
CACCATCCCA GGGTGATACA AGATGCCGTT TGCAAGGAGT CAGTTGGTAC TCACTTTACG
GCGCTGGAAA ATCCATTGGA GAGCCGTAAA CAGTGGATCT TAGCCGGTCA GGCAACCAGA
GGTAAGTTGA TATTGGATCA AGGTGCCCTA AATGCCGTGA CTCAAAAGGG GAGGAGTTTG
CTCTCTAAGG GCATAGTCAG AGTCGAAGGC AAGTTTGAGC GAGGTGCAAC GCTGCATCTT
GTCGATAGTG ATGGAAGGGA GTTTGCGCGG GGCATGAGTC GCTACAGTGC CAAAGATCTG
CATCTGATAG CGGGTAAGCA CTCGGATGAT ATCGAGTCGC TGCTTGGCTA CGATTATGGT
GATGCCGTGG TTCATCGTAA TGATATGGTC GTTCTTTAG
|
|---|
| Protein sequence | MNLSEIGYRR VVVKLGTSVL TSGSRQLDKA HMVELARQMA ALMKAGVEVV LCTSGAIAAG
REHLGYPELP DTVANKQLLA AVGQSQLILA WAQLFSIYGL HVGQLLLTRA DLHDRERYLN
ARDSLNALLA QGIIPIINEN DAVATNEIKV GDNDNLSARA ALLCDADLLI LLTDQRGLFD
ADPRSNPDAK LIKQVVNIDD SLRLLAGGAV SGLGTGGMAT KLEAADIARR AGVEVIIASG
HHPRVIQDAV CKESVGTHFT ALENPLESRK QWILAGQATR GKLILDQGAL NAVTQKGRSL
LSKGIVRVEG KFERGATLHL VDSDGREFAR GMSRYSAKDL HLIAGKHSDD IESLLGYDYG
DAVVHRNDMV VL
|
|---|
| |