| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3409 |
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| Symbol | dnaK |
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| ID | 5609762 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4155301 |
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| End bp | 4157223 |
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| Gene Length | 1923 bp |
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| Protein Length | 640 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640934349 |
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| Product | molecular chaperone DnaK |
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| Protein accession | YP_001475141 |
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| Protein GI | 157376541 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0443] Molecular chaperone |
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| TIGRFAM ID | [TIGR02350] chaperone protein DnaK |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0543718 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00118284 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGGTAAAA TTATTGGTAT CGATTTAGGC ACAACCAACT CTTGCGTAGC CGTATTAGAT
GGCGACACAC CACGCGTATT GGAGAATGCC GAAGGCGATC GTACTACCCC TTCAATCATT
GCCTACACTG GTGAAGAGAT CTTAGTGGGT CAACCTGCAA AGCGTCAGGC TGTTACAAAC
CCAACAAATA CTTTCTTCGC AATTAAGCGT CTTATCGGTC GTCGTTTTAA AGATGACGAA
GTTCAGCGTG ATGTTGACAT CATGCCGTTC AAGATCATCG GTGCCGACAA TGGCGATGCA
TGGGTTGAAG CTCATGGTAA GAAGATGGCT CCGCCACAAG TTTCAGCTGA AACTTTGAAG
AAGATGAAGA AAACTGCCGA AGATTTCTTA GGCGAAGAAG TGACAGAAGC GGTAATTACC
GTTCCTGCAT ACTTCAACGA TTCACAGCGT CAAGCGACTA AAGATGCTGG CCGTATCGCT
GGTCTTGAAG TTAAGCGTAT CATCAACGAG CCAACAGCGG CTGCACTTGC TTACGGTATC
GATAAGAAGC AAGGTGACAA CATCGTTGCT GTATACGACT TAGGTGGTGG TACTTTCGAT
ATCTCAATCA TCGAAATCGA CAGTGTTGAC GGCGAGCAGA CTTTCGAAGT GCTTGCGACT
AACGGTGACA CTCACTTAGG CGGTGAAGAT TTTGATAACC GTCTAATTAA CTACCTGGCA
GACGAGTTCA AGAAAGAGCA ATCTCTTGAC CTACGCAACG ATCCGCTAGC GATGCAGCGT
CTGAAAGAAG CTGCAGAGAA AGCAAAAATT GAGCTTTCAA GCGCATCACA AACTGAAGTT
AACCTGCCTT ACATCACCGC CGATGCAACA GGTCCTAAAC ACTTAGTGGT TAAGATCACT
CGAGCAAAAC TTGAGTCATT AGTTGAAGAC CTTATTACAC GTACGCTTGA GCCGCTAAAA
GTTGCTCTTG CAGATGCAGA CCTATCAGTT TCTGATATCA ACGAAGTGAT TCTTGTTGGT
GGTCAGACAC GTATGCCTAA AGTACGTACC GAGGTTTCTG AGTTCTTCGG TAAAGAACTA
CGTCAAGATG TTAACCCTGA TGAAGCGGTT GCCATTGGTG CAGCAGTTCA AGCCGGTGTA
CTTTCTGGTG ATGTAAAAGA CGTACTTCTA CTAGACGTTA CACCTCTGTC TCTTGGTATT
GAGACTATGG GTAGCGTAAT GACTAAGCTT ATCGAGAAGA ACACCACTAT CCCGACGAAA
GCTTCACAAA CATTCTCGAC TGCTGACGAT AACCAGAGTG CTGTGACTAT TCACGTACTT
CAGGGTGAGC GTAAGCAATC AAGCGGTAAC AAGTCTCTGG GTCAATTTAA CCTGGAAGGT
ATCGAAGCAG CTCCTCGTGG GATGCCACAG ATTGAAGTGG CTTTCGATAT CGATGCCGAT
GGTATCTTGC ATGTTTCTGC AACCGATAAG AAAACAGGTA AAGCACAGAA TATCACCATT
AAAGCCTCTT CTGGTCTGAG TGAAGAAGAA GTAGAAGCTA TGGTTCGTGA TGCTGAAGCA
CACGCTGACG AAGACGCTAA GTTCGAAGAG CTGGTCACTG CACGTAACCA AGCAGATGGC
ATGGTTCATG CGACTAAGAA GCAGATCGAA GAAGCCGGTG AAGCACTACC AAGCGATGAG
AAAGAGAAGA TTGAAACTGC AATGGCTGCA GTCGATACCG CAGTTAAGGG TAACGACAAA
GAAGCAATTG AGAAGTCAAC TCAAGAGCTA ATGGAAGCGT CTTCGAAGTT GATGGAAATT
GCCCAAGCTA AGGCGCAAGC TGAGCAGGGA CAGCAGGCTC CAGAAGGTGA AGCACAAGCG
GCTAAGCCTG ATGAAGATGT TGTTGATGCT GAGTTTGAAG AAGTGAAAGA TGACAAGAAA
TAA
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| Protein sequence | MGKIIGIDLG TTNSCVAVLD GDTPRVLENA EGDRTTPSII AYTGEEILVG QPAKRQAVTN
PTNTFFAIKR LIGRRFKDDE VQRDVDIMPF KIIGADNGDA WVEAHGKKMA PPQVSAETLK
KMKKTAEDFL GEEVTEAVIT VPAYFNDSQR QATKDAGRIA GLEVKRIINE PTAAALAYGI
DKKQGDNIVA VYDLGGGTFD ISIIEIDSVD GEQTFEVLAT NGDTHLGGED FDNRLINYLA
DEFKKEQSLD LRNDPLAMQR LKEAAEKAKI ELSSASQTEV NLPYITADAT GPKHLVVKIT
RAKLESLVED LITRTLEPLK VALADADLSV SDINEVILVG GQTRMPKVRT EVSEFFGKEL
RQDVNPDEAV AIGAAVQAGV LSGDVKDVLL LDVTPLSLGI ETMGSVMTKL IEKNTTIPTK
ASQTFSTADD NQSAVTIHVL QGERKQSSGN KSLGQFNLEG IEAAPRGMPQ IEVAFDIDAD
GILHVSATDK KTGKAQNITI KASSGLSEEE VEAMVRDAEA HADEDAKFEE LVTARNQADG
MVHATKKQIE EAGEALPSDE KEKIETAMAA VDTAVKGNDK EAIEKSTQEL MEASSKLMEI
AQAKAQAEQG QQAPEGEAQA AKPDEDVVDA EFEEVKDDKK
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