| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3404 |
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| Symbol | |
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| ID | 5609605 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4149970 |
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| End bp | 4151127 |
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| Gene Length | 1158 bp |
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| Protein Length | 385 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640934344 |
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| Product | carbamoyl phosphate synthase small subunit |
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| Protein accession | YP_001475136 |
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| Protein GI | 157376536 |
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| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism |
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| COG ID | [COG0505] Carbamoylphosphate synthase small subunit |
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| TIGRFAM ID | [TIGR01368] carbamoyl-phosphate synthase, small subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0000786314 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGAGGTCG CGTTGACAAA GTCTGCCTTA CTCGTACTCG AAGATGGAAC TGTATTCTCT
GGCACAGCAA TTGGTGCCGA TGGACATGCT GTTGGTGAAG TGGTTTTTAA CACTTCAATG
ACCGGATACC AGGAGATACT GACTGATCCG TCTTATTCTC GTCAAATTGT AACTCTAACC
TATCCTCATA TTGGTAACAC AGGTACCAAT GATGAAGATA CAGAATCTGA TTCAGTTCAT
GCTCGTGGTC TGATTATTAG AGATCTTCCT TTAATTGCTA GCAACTTTCG TAATAAGCAA
AGCTTAAGCG ATTATCTTAA AGCCAACAAT ATTGTTGGTA TTGCAGATAT CGATACACGT
AAGTTGACCC GTATTTTGCG GGAAAAAGGA GCATTGGCTG GATGTATTCT GGTCGGTGAA
CAGGATGTGG CTAAGGCTCT TGCCGAAGCA AACGCATTTC CTGGTTTAAA AGGCATGGAT
TTAGCCAAAG AAGTAACGAC TGAAACCAGT TATCAGTGGC GAAGTGGAAG CTGGCGTTTA
GTCGGTGGTC TGCCGGATGA TACGCCTGAA TCTGAATTAA AATACAAAGT TGTAGCTTAT
GACTACGGTG TGAAACGTAA TATTTTACGT ATGCTTGTTG ACCGTGGTTG TGATGTGACG
GTTGTACCTG CAAAAACTCC TGCATCGACA GTGTTAGCCA TGAATCCTGA TGGGATCTTC
CTATCGAATG GACCTGGCGA TCCTGAGCCA TGTGACTATG CCATTGCTGC AATTCAAGAG
ATCTTAAAGA CGGATATCCC AGTCTTTGGT ATCTGTTTGG GTCACCAGCT GTTGGCATTA
GCCTCTGGAG CTAAAACTTC TAAGATGAAG TTTGGTCACC ATGGTGCTAA CCACCCCGTC
AGTAACATCG AGCAAGGTAA CGTTATGATC ACCAGCCAGA ACCACGGTTT TGCGGCGGAT
GAGGATAGCC TACCTGATAA TATTAAAGTG ACACATAAGT CGCTGTTTGA TGGTTCACTG
CAAGGAATAC ATTTGACGGA TAAGCCAGCC TTTAGCTTCC AGGGACACCC TGAAGCGAGT
CCGGGTCCCC ATGATGCCGC TCCTTTGTTC AATCATTTTA TTGAGCTTAT AGAGCTGTAT
CGTCAACACG CCAAATAG
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| Protein sequence | MEVALTKSAL LVLEDGTVFS GTAIGADGHA VGEVVFNTSM TGYQEILTDP SYSRQIVTLT
YPHIGNTGTN DEDTESDSVH ARGLIIRDLP LIASNFRNKQ SLSDYLKANN IVGIADIDTR
KLTRILREKG ALAGCILVGE QDVAKALAEA NAFPGLKGMD LAKEVTTETS YQWRSGSWRL
VGGLPDDTPE SELKYKVVAY DYGVKRNILR MLVDRGCDVT VVPAKTPAST VLAMNPDGIF
LSNGPGDPEP CDYAIAAIQE ILKTDIPVFG ICLGHQLLAL ASGAKTSKMK FGHHGANHPV
SNIEQGNVMI TSQNHGFAAD EDSLPDNIKV THKSLFDGSL QGIHLTDKPA FSFQGHPEAS
PGPHDAAPLF NHFIELIELY RQHAK
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