| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3403 |
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| Symbol | carB |
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| ID | 5609604 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4146731 |
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| End bp | 4149949 |
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| Gene Length | 3219 bp |
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| Protein Length | 1072 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640934343 |
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| Product | carbamoyl phosphate synthase large subunit |
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| Protein accession | YP_001475135 |
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| Protein GI | 157376535 |
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| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism |
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| COG ID | [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ) |
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| TIGRFAM ID | [TIGR01369] carbamoyl-phosphate synthase, large subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.000056188 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGCCAAAAC GTACAGATAT AAAAAGTATT CTTATCCTGG GTGCTGGCCC GATTGTTATC
GGACAAGCAT GTGAGTTTGA TTACTCTGGT GCCCAGGCTT GTAAAGCGCT GCGTGAAGAA
GGTTACCGGG TCATCCTCGT TAACTCTAAT CCTGCAACTA TTATGACCGA TCCAGAGATG
GCCGATGCGA CTTATATCGA GCCAATTCAC TGGGAAGTTG TTCGTAACAT TATTGCCAAA
GAACGCCCCG ATGCGATTCT TCCGACTATG GGCGGTCAGA CGGCACTTAA CTGTGCTCTT
GAGCTAGAGA GCAAAGGCGT CCTCGAAGAG TTTAATGTTG AGATGATCGG TGCGACTGCC
GATGCGATTG ATAAAGCTGA AGATCGTAGT CGTTTCGATA AGGCAATGAA AGCAATTGGC
CTCGAGTGTC CTCGTGCCGG TATTGCCCAT ACATTGGATG AGGCCAACGC CGTAGTGGCA
GAGCTTGGCT TCCCTTGTAT TATCCGCCCG TCATTCACCA TGGGTGGCAG TGGTGGTGGT
ATCGCCTACA ACAAAGAGGA GTTCGAGGAG ATCTGTTCTC AGGGTCTTGA ACTTTCACCG
ACGAGCGAAC TGCTTATCGA TGAATCTTTG ATTGGTTGGA AAGAGTATGA GATGGAAGTG
GTACGTGATC GCAATGACAA TTGCATCATC GTCTGTGCTA TCGAAAACTT TGATCCTATG
GGCGTTCATA CCGGTGACTC TATTACGGTC GCCCCCGCAC AAACCCTAAC TGATAAAGAG
TATCAGTTGA TGCGTAATGC ATCACTTGCT GTACTGCGTG AGATTGGTGT TGAGACCGGT
GGGTCAAACG TACAGTTTGG TATTAACCCT GTTGATGGCC GTATGGTTAT CATCGAGATG
AACCCGCGTG TATCACGTTC ATCTGCACTC GCGTCTAAAG CGACGGGTTT CCCAATCGCT
AAAATTGCGG CAAAACTGGC TGTTGGTTTC ACCTTAGATG AGCTTAAAAA TGACATCACA
GGTGGCAACA CACCAGCATC ATTTGAGCCT GCAATCGATT ACGTAGTGAC TAAATTACCA
CGCTTTAACT TTGAGAAGTT TGCCGGTGCG AATGACCGCC TCACGACTCA GATGAAGTCA
GTGGGTGAAG TGATGGCCAT TGGCCGTACT TTCCAGGAAT CACTTCAAAA AGCCCTTCGT
GGTCTTGAAG TTAGCAAAAA TGGTTTAGAC CCGATAATCG ATATCGATGA ACCAGAAGCT
ATGGCGCGTA TTCGTCATGA ACTTCAAGAG CCGGGTGCCG AGCGTATCTG GTATATCGCA
GACGCATTTC GCGCCGGATT AACCGTCGAT GATATCTTTG GTTTAACGAA GATTGACCCT
TGGTTCTTAG TACAGATGCA AGATCTGCTT CAACTTGAAT CTGAAGTGAA AGAATCGGGC
ATGTCTGGCA TGAACGAGAC ATTCCTTCGC CAGTTAAAGC GTAAAGGTTT CTCTGATATT
CGTCTTTCAC TTTTATTGGG TGTTAGTGAA TCTGAGATGC GAAAATTGCG TCACAGACAT
GAGATATTCC CAGTCTACAA GCGCGTCGAT ACCTGTGCTG CCGAATTTTC AACTGATACG
GCTTACATGT ACTCTACCTA TGAAGAGGAG TGTGAGGCAG CACCGTCAAA TCGTGACAAG
ATCATGATAT TAGGTGGTGG GCCAAACAGA ATTGGTCAAG GTATCGAGTT TGATTACTGT
TGTGTTCATG CGGCGTTAGC GCTGCGTGAA GATGGTTACG AAACCATCAT GGTTAACTGT
AACCCTGAGA CTGTATCGAC CGATTACGAC ACTTCAGACA GACTCTATTT TGAGCCTGTT
ACCCTTGAAG ATGTGCTGGA GATCGTCCGT ATTGAAAAGC CGAAAGGTGT TATCGTTCAA
TACGGTGGTC AGACGCCGCT TAAGCTGGCT CGTGAACTCG AAGCCGCGGG TGTGCCTATT
ATCGGTACCA GCCCGGATGC GATTGACCGC GCCGAAGATC GTGAGCGTTT CCAACAGGCG
ATTCAGCGTC TAGAGATGAA GCAGCCTGAA AATGACACGG TTACCACTGT TGAAAGAGCT
GTGATTTCTG CCGAGCGTAT CGGTTACCCA TTAGTGGTTC GCCCATCTTA TGTACTGGGT
GGCCGCGCGA TGGAAATTGT TTATGATGAG CAGGACTTGC GTCGTTACTT CAACGAAGCG
GTTAGCGTGT CAAATGCATC GCCTGTACTA CTGGACCGCT TCCTGGATAA TGCGATTGAG
ATCGATATCG ATGCTGTCTG CGACGGTGAA ACCGTTGTTG TCGGTTCTAT CATGGAACAT
ATCGAGCAAG CGGGTGTTCA CTCGGGTGAC TCAGGATGTT CACTACCGCC CTATAGCTTA
AGCGACGATA TTCAAAATCG TATGCGCGAG CAGGTTGGTA AGCTAGCGAT GGAACTGGGC
GTTATCGGTT TGATGAATGT CCAGTTTGCG GTGAAGGATG ATGAGATCTA CATGATCGAA
GTTAATCCAC GCGCAGCGCG TACCGTGCCA TTTGTCTCTA AAGCTACGGG CGTGCCTTTA
GCTAAGATTG CGGCGCGAGT GATGGCAGGT CAAAGCCTAA AGTCACAGAA CTTCACCAAG
GAAGTTATCC CACCCTATTA CTCTGTTAAA GAGGTGGTAT TACCTTTCAA TAAGTTCCCG
GGTGTGGATC CTCTGCTTGG CCCTGAAATG CGCTCAACTG GTGAAGTGAT GGGGGTCGGT
GAAACGTTTG CCGAAGCCTA TGCAAAGGCT CAACTCGGTG CCACCAGCGA AGTCCCTAAG
TCTGGCCGCG CGTTATTGTC TGTTCGTAAC AGTGATAAGG CACGTGTTGT TGATTTAGCG
GCTAAGTTAA TTGGCTTAGG TTATGAGATC GATGCGACTC ATGGTACCGC GGTTGTACTA
GGTGAAGCGG GTATCAATCC TCGTTTGGTA AACAAGGTAC ATGAAGGTCG TCCACACATT
CTTGACCGTA TAAAGAATGA TGAGTACACC TACATAGTTA ACACAACCGA GGGGCGTCAG
GCGATTGAAG ACTCACGCCA GTTGCGTCGT GGTGCCTTGA GATACAAGGT TAACTACACG
ACAACCTTGA ATGCTGCATT TGCGACCTGT ATGGCTCACT CGGCAGATGA TCGTAGTAAT
GTAAACTCTG TGCAAGAATT GCATAGTAAA ATTAAGTGA
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| Protein sequence | MPKRTDIKSI LILGAGPIVI GQACEFDYSG AQACKALREE GYRVILVNSN PATIMTDPEM
ADATYIEPIH WEVVRNIIAK ERPDAILPTM GGQTALNCAL ELESKGVLEE FNVEMIGATA
DAIDKAEDRS RFDKAMKAIG LECPRAGIAH TLDEANAVVA ELGFPCIIRP SFTMGGSGGG
IAYNKEEFEE ICSQGLELSP TSELLIDESL IGWKEYEMEV VRDRNDNCII VCAIENFDPM
GVHTGDSITV APAQTLTDKE YQLMRNASLA VLREIGVETG GSNVQFGINP VDGRMVIIEM
NPRVSRSSAL ASKATGFPIA KIAAKLAVGF TLDELKNDIT GGNTPASFEP AIDYVVTKLP
RFNFEKFAGA NDRLTTQMKS VGEVMAIGRT FQESLQKALR GLEVSKNGLD PIIDIDEPEA
MARIRHELQE PGAERIWYIA DAFRAGLTVD DIFGLTKIDP WFLVQMQDLL QLESEVKESG
MSGMNETFLR QLKRKGFSDI RLSLLLGVSE SEMRKLRHRH EIFPVYKRVD TCAAEFSTDT
AYMYSTYEEE CEAAPSNRDK IMILGGGPNR IGQGIEFDYC CVHAALALRE DGYETIMVNC
NPETVSTDYD TSDRLYFEPV TLEDVLEIVR IEKPKGVIVQ YGGQTPLKLA RELEAAGVPI
IGTSPDAIDR AEDRERFQQA IQRLEMKQPE NDTVTTVERA VISAERIGYP LVVRPSYVLG
GRAMEIVYDE QDLRRYFNEA VSVSNASPVL LDRFLDNAIE IDIDAVCDGE TVVVGSIMEH
IEQAGVHSGD SGCSLPPYSL SDDIQNRMRE QVGKLAMELG VIGLMNVQFA VKDDEIYMIE
VNPRAARTVP FVSKATGVPL AKIAARVMAG QSLKSQNFTK EVIPPYYSVK EVVLPFNKFP
GVDPLLGPEM RSTGEVMGVG ETFAEAYAKA QLGATSEVPK SGRALLSVRN SDKARVVDLA
AKLIGLGYEI DATHGTAVVL GEAGINPRLV NKVHEGRPHI LDRIKNDEYT YIVNTTEGRQ
AIEDSRQLRR GALRYKVNYT TTLNAAFATC MAHSADDRSN VNSVQELHSK IK
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