| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3397 |
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| Symbol | rrmJ |
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| ID | 5610349 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4141069 |
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| End bp | 4141698 |
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| Gene Length | 630 bp |
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| Protein Length | 209 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640934337 |
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| Product | 23S rRNA methyltransferase J |
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| Protein accession | YP_001475129 |
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| Protein GI | 157376529 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0293] 23S rRNA methylase |
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| TIGRFAM ID | [TIGR00438] cell division protein FtsJ |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000909068 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0000260799 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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| |
Sequence |
| Gene sequence | ATGTCAGGTA AAAAACGAAC AGCGAGTTCC TCACGTTGGA TGCAGGAACA TTTTGATGAT
CACTATGTCA AATTAGCTCA AAAACGGGGA TTTCGTTCGC GAGCCGCGTT TAAAATTGAA
GAAATTCAAG AGAAAGATAA ATTAATTCGA CCGGGGATGA CTGTGGTCGA TTTAGGGGCA
GCCCCTGGTG GTTGGTCTCA AGTTGCCGTT AAACTAGCTG GAGACAATGG TAAAGTTATC
GCTTGTGATA TTTTACCTAT GGATCCAATT GTTGGCGTCG ACTTTCTTCA GGGTGATTTT
AGAGAGGAAA AGGTGCTCGA TGCTTTGCTT ACCCGAGTGG GTGATGCAAA AGTCGATGTT
GTCTTATCTG ACATGGCACC TAATATGAGT GGTACTGGCG GGGTCGATCA GCCTCGAGCT
ATGTATTTGG TCGAATTAGC ATTAGATATG TGTCATCAAG TTTTGGCACC TAACGGTTGT
TTTGCTGTAA AAGTCTTTCA GGGGGAGGGC TTTGAAGAGT ACATGAAGTC AGTTAGAGAG
GCGTTTAAAA CCGTCAAAAC ACGTAAGCCA GACTCTTCGC GAGCTCGTTC GCGCGAAGTC
TATCTTGTGG CGACAGGGTA TAAGTTGTAG
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| Protein sequence | MSGKKRTASS SRWMQEHFDD HYVKLAQKRG FRSRAAFKIE EIQEKDKLIR PGMTVVDLGA
APGGWSQVAV KLAGDNGKVI ACDILPMDPI VGVDFLQGDF REEKVLDALL TRVGDAKVDV
VLSDMAPNMS GTGGVDQPRA MYLVELALDM CHQVLAPNGC FAVKVFQGEG FEEYMKSVRE
AFKTVKTRKP DSSRARSREV YLVATGYKL
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