| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3387 |
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| Symbol | truB |
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| ID | 5610144 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4128231 |
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| End bp | 4129196 |
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| Gene Length | 966 bp |
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| Protein Length | 321 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640934325 |
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| Product | tRNA pseudouridine synthase B |
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| Protein accession | YP_001475119 |
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| Protein GI | 157376519 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0130] Pseudouridine synthase |
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| TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00448784 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCTCGTC GTCCTCGTGG TCGCTTTATC GATGGAATAC TACTCCTGGA TAAAGATACA
GGCATGAGTT CGAACTTTGC TCTGCAGAGG GTAAAGCGCA TTTTTAATGC AGCTAAAGCG
GGCCATACCG GTGCGCTGGA CCCATTAGCA ACGGGCATGC TTCCTATCTG CCTTGGAGAG
GCGACAAAGT TCTCTCAGCA TCTTCTTGAC GCCGATAAGC GATATACCGT AACGGCTAAG
CTTGGGGAAC GAACGGATAC CAGTGATTCT GACGGCGAAG TGGTACAGAC CCGTCCCGTT
AATTTTAGCC AAGAGCTATT GATGGAGTCA TTGGATTACT TTCGTGGTGA AACCATGCAA
GTCCCTTCCA TGTACTCGGC GCTCAAGTAT CAAGGTCAAC CTCTGTATAA ATATGCCCGT
GAAGGCATAG AGGTTCCCAG AGAGGCACGT CCAATCAATG TATTTGAGCT TAACTTTATC
AGCCTGGAAG GCGATGAGTT AACGCTGGAT ATTCATTGCT CTAAAGGGAC TTATATTCGC
ACTATCACCG ATGATCTTGG TGAGATGTTA GGTTGTGGCG CTCATGTGAT CATGTTACGC
AGAACGCAGG TTGCTGAATA TCCTTACGAG CGTATGGTCA GCCTTGAGCA GCTTAACGAG
ATGGTGGCCA AAGCCGAGGC TGAAGAGATA GAGCCTAAAA CTGTGCTGGA CCCCCTGTTA
TTGCCTATGG ACACGGCTGT CAGCAAGTTT AAGGAAATTA ACTTATCTGA CAACGTTGCG
CCATATTTGA TGAACGGAAA CCCTGTTCAA GCGCCTGTAA TCGATGGGCT TGATGACGGG
GAAATAGTTC GGATCACCAT TGGCGATGAA CATAAATTTG TTGGTATTGG TTCTATGAAT
GGTGATGGCT TATTAGCACC TAAACGCTTG ATTGTGGTGC GTGATCCATC TTCTGAGTCA
AACTGA
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| Protein sequence | MARRPRGRFI DGILLLDKDT GMSSNFALQR VKRIFNAAKA GHTGALDPLA TGMLPICLGE
ATKFSQHLLD ADKRYTVTAK LGERTDTSDS DGEVVQTRPV NFSQELLMES LDYFRGETMQ
VPSMYSALKY QGQPLYKYAR EGIEVPREAR PINVFELNFI SLEGDELTLD IHCSKGTYIR
TITDDLGEML GCGAHVIMLR RTQVAEYPYE RMVSLEQLNE MVAKAEAEEI EPKTVLDPLL
LPMDTAVSKF KEINLSDNVA PYLMNGNPVQ APVIDGLDDG EIVRITIGDE HKFVGIGSMN
GDGLLAPKRL IVVRDPSSES N
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