| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3385 |
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| Symbol | |
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| ID | 5610354 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4125316 |
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| End bp | 4127349 |
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| Gene Length | 2034 bp |
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| Protein Length | 677 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640934323 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001475117 |
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| Protein GI | 157376517 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.093446 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00322897 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATGCAG GCTTTAAATC TCTTACTTGG AAACAGACGA GTCTTGTCGT TTTTTCCGCA
CTATTCTTTG CGATTGCGAT TTTTATTGTC GAAATTGCAC TGGTAGGAGT GTCTGCTAGA
GATGGTCTTA AGGACTCACA AACTGAATTG CTCGATTCGG TGGAGCAACC TGCGGCCAAT
GCCGTCTGGG CACTCGATGA CAATTTGGCC AAACAAACAT TAGAGGGCGT ACTAAAAGTT
GAACACGTAG GTTCGGCTGT AATAGAGCTC GATGATGGCT CACTGTTTGT TTCGGTCCTA
AGTAAGAAGT CATATCCAAA TATCTTTGAA GACTTCAGCA ACAAACTCTT TGGTGACCTG
AAGGAGATCT CTCGTTCTCT TTATCGACCT TTTTATTTTG AAGGCACAGA GAAACAGCAG
CTTATTGGCA CATTAACGGT TTTTTATGAT ACCCAAGGGC TGACAGATTC ACTTTTCTCT
CAACTCAAAT TCAGCTTGAT CGCCACTTTA GCTCGAGCAC TACTTATCAC ATTAGTACTC
TCCATCGTCT TTCACCGTTT TTTAACTAAA CCTATTGCTG AGATCAGTGA AGCGATCGAC
AAAATTGATC CTGAATCTCC CGATGAAAAC TTACTCCCCA TGGCTAAATC ACATACTGAT
GATGAATTAG GTTTGGTCAC ATCCAAGTTT AATCAAATTC TTATTCAATT TGGTCAGACA
CAAAGTAAGC TCAGAAAAAT GGCGACCCGA GATCCATTAA CTGGCCTACC AAATCGTACT
TTATTACTGG AAACGATTGC AGTCACGATT CAAAGAGCGC GTGTTCATAA ACATCAATTC
TGTATGTTGT TTATCGATCT CGATAGATTC AAAAATATCA ATGACTCACT CGGACATGCG
ATTGGAGACC AGTTTTTAGC ACGAATTGCT CGGGTACTCG AACGCGTAGT CGGGGATAAC
GGGACCGTAG CCAGACTCGG TGGGGATGAA TTTGTTATCT TAGCCGACGA GATCCGATCT
CCGGATCAAG CAGCGGACTT TGTCGACAAG CTTCTGCTCC AGCTCAATAC TCCCATGCAG
CTCAATGAGC ATACTATCCA TCCTGCCGCC TCAGTAGGTA TATCCATCTA TCCAGATGAT
GGAATGAGCG CAGAAGATCT TATTCGTCAT GCCGATATCG CTATGTACAG CGCCAAGGCT
GCAGGTTCTA ATCAATGGGC GTTTTTCAAA CAGCAGATGA CTGAACGTGC GGCGGTAAGG
CTCCGTACCG AAGCCTCACT GCATGACGCA CTGAAAAATG GAGAGTTTGT ACTTCATTAT
CAGCCTAAGT TCGATATTAA AACCGGCAAG GTTGTCGCCT GTGAAGCCCT CATCAGATGG
CAAAAAGATG GCCGCTTAAT CAGTCCAATG TCCTTTATTC CCGTGGCTGA AGAGACTGGA
ATTATTATCC CTATCGGGCG TTGGGTCATC GAAGAAGCCT GTAAAACAAT CAGAAAATGG
AAAAAGGAAT ATAACTTCGC TTTACCCATC GCTGTCAACG TTGCCTCTCA GCAGTTTGCA
GACGCCAGCT TAGTGCCCGA CATCAAACAG TTAGCACTCA GGTATCAAAT TAGTCCCGAT
CTGCTTGAAA TTGAGATAAC AGAAACCTCA CTGATGAATG ATATTGAGCT TGCCATATCT
AAACTTCAGC AACTTAAATC AACTGGGTTT GGTATCGCAG TGGATGATTT TGGAACGGGT
TACTCTTCAC TCTCCTATCT GAGACATCTG CCCATCACTA CGATGAAAAT CGACCGCTGT
TTCGTCACCG ACCTTCCGAA TGAGAGTGCG ATCGCATCGA CCATTTTGAT GTTAGGTCAA
CAGCTCAACT TAAACATCGT TGCCGAGGGA ATTGAAACTC GAGAGCAGTT GGATTGGTTA
AACAGTAATA ATTGCCAGAT AGGCCAAGGG TTTTATTTCA GCAAGCCTGT AACACAGAAA
GAGTTTGAAG ATAGCTATAT TAAACCTCAA ACTGCGAGTA TCAGCCATAT CTAG
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| Protein sequence | MNAGFKSLTW KQTSLVVFSA LFFAIAIFIV EIALVGVSAR DGLKDSQTEL LDSVEQPAAN
AVWALDDNLA KQTLEGVLKV EHVGSAVIEL DDGSLFVSVL SKKSYPNIFE DFSNKLFGDL
KEISRSLYRP FYFEGTEKQQ LIGTLTVFYD TQGLTDSLFS QLKFSLIATL ARALLITLVL
SIVFHRFLTK PIAEISEAID KIDPESPDEN LLPMAKSHTD DELGLVTSKF NQILIQFGQT
QSKLRKMATR DPLTGLPNRT LLLETIAVTI QRARVHKHQF CMLFIDLDRF KNINDSLGHA
IGDQFLARIA RVLERVVGDN GTVARLGGDE FVILADEIRS PDQAADFVDK LLLQLNTPMQ
LNEHTIHPAA SVGISIYPDD GMSAEDLIRH ADIAMYSAKA AGSNQWAFFK QQMTERAAVR
LRTEASLHDA LKNGEFVLHY QPKFDIKTGK VVACEALIRW QKDGRLISPM SFIPVAEETG
IIIPIGRWVI EEACKTIRKW KKEYNFALPI AVNVASQQFA DASLVPDIKQ LALRYQISPD
LLEIEITETS LMNDIELAIS KLQQLKSTGF GIAVDDFGTG YSSLSYLRHL PITTMKIDRC
FVTDLPNESA IASTILMLGQ QLNLNIVAEG IETREQLDWL NSNNCQIGQG FYFSKPVTQK
EFEDSYIKPQ TASISHI
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