Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3380 |
Symbol | |
ID | 5609929 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 4117453 |
End bp | 4118712 |
Gene Length | 1260 bp |
Protein Length | 419 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640934318 |
Product | nucleoside transporter |
Protein accession | YP_001475112 |
Protein GI | 157376512 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG1972] Nucleoside permease |
TIGRFAM ID | [TIGR00804] nucleoside transporter |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0000393425 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.00583621 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGATATTT TAATGAGTTT GGTAGGGGTG GTCACCCTAC TTGCGATAGC GTTCGGGTTA TCGAATAATA GAAAAGCAAT TAACAAGCGT ACCGTTTTTG GTGCATTAGC AATTCAGGCC GCTTTCGGTG GTTTCGTTTT ATATGTTCCA GTCGGTAAAG ATATTCTAAA GACTATTTCA GATGGCGTGT CTAGCGTTAT CGGTTATGCT CAAAACGGTA TCGGTTTCTT GTTCGGTGAT TTGGCTAACT TTAAAGTTGG TTTCATTTTC GCCATCAACG TTTTACCAGT CATTGTTTTC TTCTCTTCTC TTATTGCTGT TCTTTATTAC CTTGGCGTAA TGCAGTGGAT TATCCGTATT ATCGGTGGTG CACTACAGAA AGCTCTTGGT ACAAGCCGTA CAGAGTCTAT GTCAGCAACA GCTAACATCT TCGTTGGTCA AACTGAAGCA CCACTAGTTG TACGTCCGTT TATCGCGACT ATGACTAACT CTGAGCTATT TGCCATCATG GTAGGTGGTT TAGCGTCTAT TGCTGGTTCA GTAATGGCCG GTTATGCGCA GATGGGTGTA CCAATCGAAT ATCTAGTTGC CGCTTCATTC ATGGCAGCAC CAGGTGGTCT ATTAATGGCT AAGCTGATGC ACCCTGAAAC TGAAGAAGCT AAGAACGATA TGGAAGACCT TCCAGAAGAC CCTGATAAGC CAGCTAACGT TATCGACGCT GCTGCTGCAG GTGCTTCTTC AGGTATGCAT CTAGCACTTA ACGTTGGTGC AATGCTTCTA GCGTTCGTTG GTTTGATTGC TATGATGAAC GGCATTATCG GTGGTCTTGG CGGACTAGTC GGTATGGAAG GTCTAACTCT TGAATTGATT CTTGGTTATA TCTTCATGCC TCTTGCATTC CTTATCGGTG TGCCTTGGAG CGAAGCACTC GTTGCCGGTT CTTTCATTGG TCAGAAGATT GTTGTTAACG AATTCGTTGC CTACTTGAAC TTCGCTCCAT ACATGAAAGA TATCGCTGAT GGCGGCATGG TAGTTGCTGA AACAGGTCTT GCTATGACAG ATAGAACAAA AGCGATTATC TCTTTTGCTC TTTGTGGCTT CGCTAACCTA TCTTCAATCG CGATTCTTCT CGGTGGTCTA GGTGCTATGG CGCCAACTCG TCGTCACGAC TTAGCTAAGC TAGGTATGCG TGCAGTAGTT GCAGGTTCTC TTGCTAACTT GATGAGTGCG ACACTAGCGG GTCTATTCCT GGCACTATAA
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Protein sequence | MDILMSLVGV VTLLAIAFGL SNNRKAINKR TVFGALAIQA AFGGFVLYVP VGKDILKTIS DGVSSVIGYA QNGIGFLFGD LANFKVGFIF AINVLPVIVF FSSLIAVLYY LGVMQWIIRI IGGALQKALG TSRTESMSAT ANIFVGQTEA PLVVRPFIAT MTNSELFAIM VGGLASIAGS VMAGYAQMGV PIEYLVAASF MAAPGGLLMA KLMHPETEEA KNDMEDLPED PDKPANVIDA AAAGASSGMH LALNVGAMLL AFVGLIAMMN GIIGGLGGLV GMEGLTLELI LGYIFMPLAF LIGVPWSEAL VAGSFIGQKI VVNEFVAYLN FAPYMKDIAD GGMVVAETGL AMTDRTKAII SFALCGFANL SSIAILLGGL GAMAPTRRHD LAKLGMRAVV AGSLANLMSA TLAGLFLAL
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