| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3379 |
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| Symbol | |
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| ID | 5609928 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4116224 |
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| End bp | 4117060 |
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| Gene Length | 837 bp |
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| Protein Length | 278 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640934317 |
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| Product | nucleoside-specific channel-forming protein, Tsx |
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| Protein accession | YP_001475111 |
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| Protein GI | 157376511 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3248] Nucleoside-binding outer membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000573921 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00247146 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAAACG TTAAAACTTT AGCACTAGCA GCAGCAGCTG TAGCAGTAAT GTCTGCACCA
ACTTTCGCTG CTGACCGTGG TGACGATATC CGCGCTGGCG ATTACAGCTG GATGCAGTTC
AACGCAATGT ACGCGTTTGA CGAGCTTCCT TCTGCTGGTG AGAGTGGACA CGATTACCTG
GAAATGGAAT TCGGCGGCCG CGCTGGTGTT GTTGACCTAT ACGGTTATGT CGATGTATTC
AACTTAGCAT CTGGTGATTC AGGCGATAAG GCTGAAGGTT CTGGTGCAAG CAAGATGTTC
ATGAAGTTTG CTCCACGCTT CTCTATCGAT GCAATCACAG GTATGGATCT TTCAGCTGGT
CCAATCCAAG AAGTTTACAT CTCTACTCTA TTCAACTGGG GTGGCGGTGT TATCGGTGAA
GATGTAAACA ATGTTGCCGT AGGTATCGGT GCTGATGTAA TGGTTCCATG GTTAGGTAAA
ACTGGCATGA ACCTTTACGG TTTCTACGAC ATTAATGATA AAGATTGGAA CGGTTACCAA
TTCTCTATGA ACTGGTTCAA GCCTTTCTAC TTCCTAGAAA ATGGCAGCTT CGTTTCTTTC
CAGGGTTATG TTGATTACCA GTTTGGTGCT GATGACACTA AGGGTGACGA GTGGGTTCCT
ATGACTTCTA GCGGTGGCGC TGCATACTTC GGTGTTCACT GGCATTCAGA CAACTACGCA
CTGGGTTATG GCCTGAAGGG TTACAGCGAT GTATACCTTC TTGAAGATGG TGCTGGTAAA
GTTGGTCTAG AAACTACAGG TTTCGCACAT TACCTGACTG CTACTTACAA GTTCTAA
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| Protein sequence | MKNVKTLALA AAAVAVMSAP TFAADRGDDI RAGDYSWMQF NAMYAFDELP SAGESGHDYL
EMEFGGRAGV VDLYGYVDVF NLASGDSGDK AEGSGASKMF MKFAPRFSID AITGMDLSAG
PIQEVYISTL FNWGGGVIGE DVNNVAVGIG ADVMVPWLGK TGMNLYGFYD INDKDWNGYQ
FSMNWFKPFY FLENGSFVSF QGYVDYQFGA DDTKGDEWVP MTSSGGAAYF GVHWHSDNYA
LGYGLKGYSD VYLLEDGAGK VGLETTGFAH YLTATYKF
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